Geotrypetes seraphini

Gaboon caecilian


Information

Apple

Raw Data

Datatype Approximate Coverage Download Size
10xN/A164.460 GB
BionanoN/A2.169 GB
Dovetail GenomicsN/A169.739 GB
PacBio ScrapsN/A236.774 GB
PacBio SubReadsN/A488.315 GB
No genome size estimate available.
Last upload on 25 April 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Geotrypetes_seraphini/aGeoSer1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Geotrypetes_seraphini/aGeoSer1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Geotrypetes_seraphini/aGeoSer1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Geotrypetes_seraphini/aGeoSer1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_cambridge from 31 May 2019
aGeoSer1.pri.asm.20190531.fasta.gz (1 GB)

Contigs Scaffolds
NG LG Len LG Len
10 5 55.77 Mbp 0 414.12 Mbp
20 12 38.59 Mbp 2 282.86 Mbp
30 23 32.09 Mbp 3 265.95 Mbp
40 36 26.17 Mbp 5 190.67 Mbp
50 52 20.66 Mbp 7 147.26 Mbp
60 73 16.09 Mbp 10 123.76 Mbp
70 98 12.29 Mbp 13 85.50 Mbp
80 138 7.90 Mbp 18 70.64 Mbp
90 197 4.91 Mbp 26 36.26 Mbp
100 613 405 bp 253 2.39 Kbp
1.000x 614 3.78 Gbp 254 3.85 Gbp
Individual 1 Alternate Assembly
Version assembly_cambridge from 31 May 2019
aGeoSer1.alt.asm.20190531.fasta.gz (978 MB)

Contigs Scaffolds
NG LG Len LG Len
10 188 1.34 Mbp 188 1.34 Mbp
20 476 1.01 Mbp 476 1.01 Mbp
30 841 0.81 Mbp 841 0.81 Mbp
40 1290 0.66 Mbp 1290 0.66 Mbp
50 1826 0.56 Mbp 1826 0.56 Mbp
60 2460 0.47 Mbp 2460 0.47 Mbp
70 3226 0.38 Mbp 3226 0.38 Mbp
80 4217 0.28 Mbp 4217 0.28 Mbp
90 5688 0.17 Mbp 5688 0.17 Mbp
100 9631 253 bp 9631 253 bp
1.000x 9632 3.27 Gbp 9632 3.27 Gbp
No genome size estimate available.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.