Geotrypetes seraphini

Gaboon caecilian


Information

Resource
NCBI Taxonomy Browser NCBI:txid260995

Resource Primary Assembly Alternate Assembly
GenBank GCA_902459495.1
ENA GCA_902459495.1
UCSC Genome Browser GCA_902459495.1

Copyright Mark Wilkinson, used with permission

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x225.38 Gbp59.63x164.460 GB
Bionano1400.11 Gbp370.46x2.169 GB
Dovetail Genomics271.43 Gbp71.82x169.739 GB
PacBio SubReads274.17 Gbp72.54x488.315 GB
Coverage based on genome size 3.78 Gbp.
Last upload on 25 April 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Geotrypetes_seraphini/aGeoSer1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Geotrypetes_seraphini/aGeoSer1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Geotrypetes_seraphini/aGeoSer1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Geotrypetes_seraphini/aGeoSer1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 12 August 2019
aGeoSer1.pri.cur.20190812.fasta.gz (1 GB)

Contigs Scaffolds
NG LG Len LG Len
10 5 55.77 Mbp 0 0.55 Gbp
20 12 38.59 Mbp 1 0.53 Gbp
30 23 32.09 Mbp 2 413.75 Mbp
40 36 26.17 Mbp 3 326.38 Mbp
50 52 20.66 Mbp 4 272.61 Mbp
60 72 16.18 Mbp 5 260.40 Mbp
70 98 12.29 Mbp 7 193.86 Mbp
80 137 7.98 Mbp 9 146.68 Mbp
90 196 4.96 Mbp 12 83.87 Mbp
100 595 405 bp 162 2.39 Kbp
1.000x 596 3.77 Gbp 163 3.78 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 12 August 2019
aGeoSer1.alt.cur.20190812.fasta.gz (958 MB)

Contigs Scaffolds
NG LG Len LG Len
10 189 1.34 Mbp 189 1.34 Mbp
20 476 1.01 Mbp 476 1.01 Mbp
30 842 0.81 Mbp 842 0.81 Mbp
40 1291 0.66 Mbp 1291 0.66 Mbp
50 1828 0.56 Mbp 1828 0.56 Mbp
60 2463 0.47 Mbp 2463 0.47 Mbp
70 3230 0.38 Mbp 3230 0.38 Mbp
80 4223 0.28 Mbp 4223 0.28 Mbp
90 5697 0.17 Mbp 5697 0.17 Mbp
100 9650 253 bp 9649 253 bp
1.000x 9651 3.27 Gbp 9650 3.27 Gbp
NG based on genome size 3.78 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
aGeoSer1.MT.20191003.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.