Geotrypetes seraphini
Gaboon caecilian
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid260995 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_902459505.2 | GCA_902459495.1 |
| ENA | GCA_902459505.2 | GCA_902459495.1 |
| UCSC Genome Browser | GCA_902459505.2 | GCA_902459495.1 |
Copyright Mark Wilkinson, used with permission
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 225.38 Gbp | 59.63x | 164.460 GB |
| Bionano | 1400.11 Gbp | 370.46x | 2.169 GB |
| Dovetail Genomics | 271.43 Gbp | 71.82x | 169.739 GB |
| PacBio SubReads | 274.17 Gbp | 72.54x | 488.315 GB |
Coverage based on genome size 3.78 Gbp.
Last upload on 25 April 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Geotrypetes_seraphini/aGeoSer1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Geotrypetes_seraphini/aGeoSer1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Geotrypetes_seraphini/aGeoSer1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Geotrypetes_seraphini/aGeoSer1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Geotrypetes_seraphini/aGeoSer1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Geotrypetes_seraphini/aGeoSer1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Geotrypetes_seraphini/aGeoSer1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 12 August 2019
aGeoSer1.pri.cur.20190812.fasta.gz (1 GB)
Version assembly_curated from 12 August 2019
aGeoSer1.pri.cur.20190812.fasta.gz (1 GB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 5 | 55.77 Mbp | 0 | 0.55 Gbp |
| 20 | 12 | 38.59 Mbp | 1 | 0.53 Gbp |
| 30 | 23 | 32.09 Mbp | 2 | 413.75 Mbp |
| 40 | 36 | 26.17 Mbp | 3 | 326.38 Mbp |
| 50 | 52 | 20.66 Mbp | 4 | 272.61 Mbp |
| 60 | 72 | 16.18 Mbp | 5 | 260.40 Mbp |
| 70 | 98 | 12.29 Mbp | 7 | 193.86 Mbp |
| 80 | 137 | 7.98 Mbp | 9 | 146.68 Mbp |
| 90 | 196 | 4.96 Mbp | 12 | 83.87 Mbp |
| 100 | 595 | 405 bp | 162 | 2.39 Kbp |
| 1.000x | 596 | 3.77 Gbp | 163 | 3.78 Gbp |
NG based on genome size 3.78 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 12 August 2019
aGeoSer1.alt.cur.20190812.fasta.gz (958 MB)
Version assembly_curated from 12 August 2019
aGeoSer1.alt.cur.20190812.fasta.gz (958 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 189 | 1.34 Mbp | 189 | 1.34 Mbp |
| 20 | 476 | 1.01 Mbp | 476 | 1.01 Mbp |
| 30 | 842 | 0.81 Mbp | 842 | 0.81 Mbp |
| 40 | 1291 | 0.66 Mbp | 1291 | 0.66 Mbp |
| 50 | 1828 | 0.56 Mbp | 1828 | 0.56 Mbp |
| 60 | 2463 | 0.47 Mbp | 2463 | 0.47 Mbp |
| 70 | 3230 | 0.38 Mbp | 3230 | 0.38 Mbp |
| 80 | 4223 | 0.28 Mbp | 4223 | 0.28 Mbp |
| 90 | 5697 | 0.17 Mbp | 5697 | 0.17 Mbp |
| 100 | 9650 | 253 bp | 9649 | 253 bp |
| 1.000x | 9651 | 3.27 Gbp | 9650 | 3.27 Gbp |
NG based on genome size 3.78 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
aGeoSer1.MT.20191003.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 3 October 2019
aGeoSer1.MT.20191003.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.