Gopherus evgoodei
Goode's thornscrub tortoise
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid1825980 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_007399415.1 | GCA_007399395.1 |
| ENA | GCA_007399415.1 | GCA_007399395.1 |
| UCSC Genome Browser | GCA_007399415.1 | GCA_007399395.1 |
CC BY 4.0 Edwards et al. (wikimedia)
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 298.74 Gbp | 111.28x | 138.694 GB |
| Arima | 192.79 Gbp | 71.82x | 100.166 GB |
| Bionano | 994.16 Gbp | 370.34x | 1.704 GB |
| PacBio SubReads | 156.16 Gbp | 58.17x | 271.943 GB |
Coverage based on genome size 2.68 Gbp.
Last upload on 21 June 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Gopherus_evgoodei/rGopEvg1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gopherus_evgoodei/rGopEvg1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gopherus_evgoodei/rGopEvg1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gopherus_evgoodei/rGopEvg1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Gopherus_evgoodei/rGopEvg1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gopherus_evgoodei/rGopEvg1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gopherus_evgoodei/rGopEvg1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 3 June 2019
rGopEvg1.pri.cur.20190603.fasta.gz (656 MB)
Version assembly_curated from 3 June 2019
rGopEvg1.pri.cur.20190603.fasta.gz (656 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 5 | 35.22 Mbp | 0 | 370.34 Mbp |
| 20 | 15 | 24.11 Mbp | 1 | 299.45 Mbp |
| 30 | 29 | 16.81 Mbp | 2 | 225.14 Mbp |
| 40 | 47 | 13.53 Mbp | 4 | 147.43 Mbp |
| 50 | 69 | 10.52 Mbp | 6 | 131.61 Mbp |
| 60 | 101 | 6.90 Mbp | 8 | 108.93 Mbp |
| 70 | 149 | 4.21 Mbp | 11 | 44.29 Mbp |
| 80 | 260 | 1.12 Mbp | 21 | 17.27 Mbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.845x | 944 | 2.27 Gbp | 382 | 2.30 Gbp |
NG based on genome size 2.68 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 31 January 2019
rGopEvg1.alt.cur.20190131.fasta.gz (582 MB)
Version assembly_curated from 31 January 2019
rGopEvg1.alt.cur.20190131.fasta.gz (582 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 130 | 1.53 Mbp | 130 | 1.53 Mbp |
| 20 | 339 | 1.10 Mbp | 339 | 1.10 Mbp |
| 30 | 624 | 0.81 Mbp | 624 | 0.81 Mbp |
| 40 | 1015 | 0.58 Mbp | 1015 | 0.58 Mbp |
| 50 | 1583 | 0.39 Mbp | 1583 | 0.39 Mbp |
| 60 | 2546 | 0.19 Mbp | 2546 | 0.19 Mbp |
| 70 | 5712 | 41.51 Kbp | 5712 | 41.51 Kbp |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.731x | 8736 | 1.96 Gbp | 8736 | 1.96 Gbp |
NG based on genome size 2.68 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
rGopEvg1.MT.20191002.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 2 October 2019
rGopEvg1.MT.20191002.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.