Gopherus evgoodei

Goode's thornscrub tortoise


Information

NCBI Taxonomy Browser
Primary assembly in GenBank or ENA
Alternate assembly in GenBank or ENA
CC BY 4.0 Edwards et al. (wikimedia)

Raw Data

Datatype Approximate Coverage Download Size
10x111.28x138.694 GB
Arima71.82x100.166 GB
Bionano370.34x1.704 GB
PacBio ScrapsN/A424.931 GB
PacBio SubReads58.17x271.943 GB
Coverage based on genome size 2.68 Gbp.
Last upload on 21 June 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Gopherus_evgoodei/rGopEvg1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gopherus_evgoodei/rGopEvg1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gopherus_evgoodei/rGopEvg1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gopherus_evgoodei/rGopEvg1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"

Assemblies

Primary assembly in GenBank or ENA
Alternate assembly in GenBank or ENA
Individual 1 Primary Assembly
Version assembly_curated from 3 June 2019
rGopEvg1.pri.cur.20190603.fasta.gz (656 MB)

Contigs Scaffolds
NG LG Len LG Len
10 5 35.22 Mbp 0 370.34 Mbp
20 15 24.11 Mbp 1 299.45 Mbp
30 29 16.81 Mbp 2 225.14 Mbp
40 47 13.53 Mbp 4 147.43 Mbp
50 69 10.52 Mbp 6 131.61 Mbp
60 101 6.90 Mbp 8 108.93 Mbp
70 149 4.21 Mbp 11 44.29 Mbp
80 260 1.12 Mbp 21 17.27 Mbp
90 - - - -
100 - - - -
0.845x 944 2.27 Gbp 382 2.30 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 31 January 2019
rGopEvg1.alt.cur.20190131.fasta.gz (582 MB)

Contigs Scaffolds
NG LG Len LG Len
10 130 1.53 Mbp 130 1.53 Mbp
20 339 1.10 Mbp 339 1.10 Mbp
30 624 0.81 Mbp 624 0.81 Mbp
40 1015 0.58 Mbp 1015 0.58 Mbp
50 1583 0.39 Mbp 1583 0.39 Mbp
60 2546 0.19 Mbp 2546 0.19 Mbp
70 5712 41.51 Kbp 5712 41.51 Kbp
80 - - - -
90 - - - -
100 - - - -
0.731x 8736 1.96 Gbp 8736 1.96 Gbp
NG based on genome size 2.68 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_mt_milan from 10 March 2019
rGopEvg1.MT.20190310.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.