Hippoglossus hippoglossus

Atlantic halibut


Information

NCBI Taxonomy Browser
public domain

Raw Data

Datatype Approximate Coverage Download Size
10x73.76x37.667 GB
Arima194.75x100.381 GB
Bionano496.25x0.669 GB
PacBio SubReads56.23x97.581 GB
Coverage based on genome size 1.00 Gbp.
Last upload on 2 October 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_vgp_standard_1.5 from 23 August 2019
fHipHip1.pri.asm.20190823.fasta.gz (175 MB)

Contigs Scaffolds
NG LG Len LG Len
10 4 17.98 Mbp 3 28.85 Mbp
20 11 11.85 Mbp 6 27.46 Mbp
30 22 7.15 Mbp 10 24.89 Mbp
40 39 4.49 Mbp 15 22.38 Mbp
50 75 1.58 Mbp 19 20.72 Mbp
60 283 69.45 Kbp 40 0.78 Mbp
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.602x 347 0.60 Gbp 106 0.61 Gbp
Individual 1 Alternate Assembly
Version assembly_vgp_standard_1.5 from 23 August 2019
fHipHip1.alt.asm.20190823.fasta.gz (197 MB)

Contigs Scaffolds
NG LG Len LG Len
10 34 2.18 Mbp 34 2.18 Mbp
20 93 1.41 Mbp 93 1.41 Mbp
30 178 0.97 Mbp 178 0.97 Mbp
40 307 0.58 Mbp 307 0.58 Mbp
50 561 0.25 Mbp 561 0.25 Mbp
60 1594 51.32 Kbp 1594 51.32 Kbp
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.668x 3969 0.67 Gbp 3969 0.67 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 October 2019
fHipHip1.MT.20191004.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.