Hippoglossus hippoglossus

Atlantic halibut


Information

Resource
NCBI Taxonomy Browser NCBI:txid8267

Resource Primary Assembly Alternate Assembly
GenBank GCA_009819705.1 GCA_009819745.1
ENA GCA_009819705.1 GCA_009819745.1
UCSC Genome Browser GCA_009819705.1 GCA_009819745.1

public domain

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x73.76 Gbp73.76x37.667 GB
Arima194.75 Gbp194.75x100.381 GB
Bionano496.25 Gbp496.25x0.669 GB
PacBio SubReads56.23 Gbp56.23x97.581 GB
Coverage based on genome size 1.00 Gbp.
Last upload on 2 October 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 25 November 2019
fHipHip1.pri.cur.20191125.fasta.gz (172 MB)

Contigs Scaffolds
NG LG Len LG Len
10 5 17.54 Mbp 3 29.17 Mbp
20 11 11.80 Mbp 6 28.51 Mbp
30 22 7.02 Mbp 10 26.31 Mbp
40 40 4.20 Mbp 14 24.74 Mbp
50 77 1.52 Mbp 18 21.26 Mbp
60 - - - -
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90 - - - -
100 - - - -
0.593x 346 0.59 Gbp 56 0.60 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 25 November 2019
fHipHip1.alt.cur.20191125.fasta.gz (199 MB)

Contigs Scaffolds
NG LG Len LG Len
10 34 2.18 Mbp 34 2.18 Mbp
20 93 1.41 Mbp 93 1.41 Mbp
30 178 0.97 Mbp 178 0.97 Mbp
40 307 0.58 Mbp 307 0.58 Mbp
50 559 0.26 Mbp 558 0.26 Mbp
60 1525 55.94 Kbp 1512 56.85 Kbp
70 - - - -
80 - - - -
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100 - - - -
0.677x 4115 0.68 Gbp 4053 0.68 Gbp
NG based on genome size 1.00 Gbp.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 October 2019
fHipHip1.MT.20191004.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.