Hippoglossus hippoglossus
Atlantic halibut
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid8267 |
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | GCA_009819705.1 | GCA_009819745.1 |
ENA | GCA_009819705.1 | GCA_009819745.1 |
UCSC Genome Browser | GCA_009819705.1 | GCA_009819745.1 |
public domain
Raw Data
Datatype | Approximate Size | Download Size | |
---|---|---|---|
Bases | Coverage | ||
10x | 73.76 Gbp | 73.76x | 37.667 GB |
Arima | 194.75 Gbp | 194.75x | 100.381 GB |
Bionano | 496.25 Gbp | 496.25x | 0.669 GB |
PacBio SubReads | 56.23 Gbp | 56.23x | 97.581 GB |
Coverage based on genome size 1.00 Gbp.
Last upload on 2 October 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Hippoglossus_hippoglossus/fHipHip1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 25 November 2019
fHipHip1.pri.cur.20191125.fasta.gz (172 MB)
Version assembly_curated from 25 November 2019
fHipHip1.pri.cur.20191125.fasta.gz (172 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 5 | 17.54 Mbp | 3 | 29.17 Mbp |
20 | 11 | 11.80 Mbp | 6 | 28.51 Mbp |
30 | 22 | 7.02 Mbp | 10 | 26.31 Mbp |
40 | 40 | 4.20 Mbp | 14 | 24.74 Mbp |
50 | 77 | 1.52 Mbp | 18 | 21.26 Mbp |
60 | - | - | - | - |
70 | - | - | - | - |
80 | - | - | - | - |
90 | - | - | - | - |
100 | - | - | - | - |
0.593x | 346 | 0.59 Gbp | 56 | 0.60 Gbp |
NG based on genome size 1.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 25 November 2019
fHipHip1.alt.cur.20191125.fasta.gz (199 MB)
Version assembly_curated from 25 November 2019
fHipHip1.alt.cur.20191125.fasta.gz (199 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 34 | 2.18 Mbp | 34 | 2.18 Mbp |
20 | 93 | 1.41 Mbp | 93 | 1.41 Mbp |
30 | 178 | 0.97 Mbp | 178 | 0.97 Mbp |
40 | 307 | 0.58 Mbp | 307 | 0.58 Mbp |
50 | 559 | 0.26 Mbp | 558 | 0.26 Mbp |
60 | 1525 | 55.94 Kbp | 1512 | 56.85 Kbp |
70 | - | - | - | - |
80 | - | - | - | - |
90 | - | - | - | - |
100 | - | - | - | - |
0.677x | 4115 | 0.68 Gbp | 4053 | 0.68 Gbp |
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 October 2019
fHipHip1.MT.20191004.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 4 October 2019
fHipHip1.MT.20191004.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.