Lacerta agilis

sand lizard


Information

Resource
NCBI Taxonomy Browser NCBI:txid80427

Resource Primary Assembly Alternate Assembly
GenBank GCA_009819535.1 GCA_009819545.1
ENA GCA_009819535.1 GCA_009819545.1
UCSC Genome Browser GCA_009819535.1 GCA_009819545.1

CC BY-SA 3.0 Quartl (wikimedia)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x150.46 Gbp75.23x76.328 GB
Arima177.23 Gbp88.62x89.615 GB
Bionano993.79 Gbp496.89x1.730 GB
PacBio SubReads126.83 Gbp63.42x221.246 GB
Coverage based on genome size 2.00 Gbp.
Last upload on 16 September 2019.
Download each datatype using the AWS Command Line Interface:

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 24 September 2019
rLacAgi1.pri.cur.20190924.fasta.gz (406 MB)

Contigs Scaffolds
NG LG Len LG Len
10 7 22.14 Mbp 1 120.75 Mbp
20 20 11.49 Mbp 3 100.70 Mbp
30 42 7.59 Mbp 5 95.50 Mbp
40 73 5.65 Mbp 7 84.10 Mbp
50 118 3.37 Mbp 10 61.60 Mbp
60 193 2.03 Mbp 13 51.72 Mbp
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.694x 407 1.39 Gbp 28 1.39 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 24 September 2019
rLacAgi1.alt.cur.20190924.fasta.gz (427 MB)

Contigs Scaffolds
NG LG Len LG Len
10 148 0.98 Mbp 148 0.98 Mbp
20 402 0.64 Mbp 402 0.64 Mbp
30 773 0.45 Mbp 773 0.45 Mbp
40 1321 0.28 Mbp 1321 0.28 Mbp
50 2398 0.12 Mbp 2398 0.12 Mbp
60 5159 50.84 Kbp 5159 50.84 Kbp
70 10811 22.60 Kbp 10811 22.60 Kbp
80 - - - -
90 - - - -
100 - - - -
0.715x 12662 1.43 Gbp 12660 1.43 Gbp
NG based on genome size 2.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller_nanopore from 23 April 2020
rLacAgi1.MT.20200423.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.