Lutra lutra

European otter


Information

Resource
NCBI Taxonomy Browser NCBI:txid9657

Resource Primary Assembly Alternate Assembly
GenBank GCA_902655055.2 GCA_902653095.1
ENA GCA_902655055.2 GCA_902653095.1
UCSC Genome Browser GCA_902655055.2 GCA_902653095.1

(pixabay)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x262.00 Gbp107.45x165.375 GB
PacBio SubReads157.70 Gbp64.67x273.251 GB
Coverage based on genome size 2.44 Gbp.
Last upload on 4 June 2020.
Download each datatype using the AWS Command Line Interface:

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 22 August 2019
mLutLut1.pri.cur.20190822.fasta.gz (709 MB)

Contigs Scaffolds
NG LG Len LG Len
10 2 85.73 Mbp 1 210.65 Mbp
20 5 63.46 Mbp 2 201.32 Mbp
30 10 52.24 Mbp 3 197.71 Mbp
40 16 39.86 Mbp 4 165.81 Mbp
50 22 30.40 Mbp 6 149.00 Mbp
60 31 24.23 Mbp 8 144.09 Mbp
70 43 18.92 Mbp 10 108.79 Mbp
80 57 14.61 Mbp 12 96.45 Mbp
90 80 7.48 Mbp 14 89.08 Mbp
100 227 15.22 Kbp 42 15.22 Kbp
1.000x 228 2.44 Gbp 43 2.44 Gbp
NG based on genome size 2.44 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 22 August 2019
mLutLut1.alt.cur.20190822.fasta.gz (315 MB)

Contigs Scaffolds
NG LG Len LG Len
10 48 1.28 Mbp 48 1.28 Mbp
20 197 0.51 Mbp 197 0.51 Mbp
30 472 0.32 Mbp 472 0.32 Mbp
40 871 0.23 Mbp 871 0.23 Mbp
50 1411 0.17 Mbp 1411 0.17 Mbp
60 2120 0.13 Mbp 2120 0.13 Mbp
70 3053 0.10 Mbp 3053 0.10 Mbp
80 4285 76.83 Kbp 4285 76.83 Kbp
90 5908 57.86 Kbp 5908 57.86 Kbp
100 8505 338 bp 8505 338 bp
1.000x 8506 1.08 Gbp 8506 1.08 Gbp
NG based on genome size 2.44 Gbp.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
mLutLut1.MT.20191003.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.