Lynx canadensis

Canada lynx


Information

Resource
NCBI Taxonomy Browser NCBI:txid61383

Resource Primary Assembly Alternate Assembly
GenBank GCA_007474595.2 GCA_007474575.2
ENA GCA_007474595.2 GCA_007474575.2
UCSC Genome Browser GCA_007474595.2 GCA_007474575.2

CC BY 2.0 Keith Williams (flickr)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x324.39 Gbp131.25x194.683 GB
Arima231.53 Gbp93.68x114.006 GB
Bionano1447.30 Gbp585.59x2.321 GB
PacBio SubReads179.82 Gbp72.76x311.347 GB
Coverage based on genome size 2.47 Gbp.
Last upload on 16 August 2018.
Download each datatype using the AWS Command Line Interface:

Assemblies

Individual 4 Primary Assembly
Version assembly_curated from 8 June 2020
mLynCan4.pri.cur.20200608.fasta.gz (700 MB)

Contigs Scaffolds
NG LG Len LG Len
10 9 23.42 Mbp 1 220.95 Mbp
20 23 14.91 Mbp 2 205.93 Mbp
30 42 11.68 Mbp 3 168.99 Mbp
40 66 9.13 Mbp 4 158.93 Mbp
50 97 7.41 Mbp 6 147.28 Mbp
60 136 5.66 Mbp 8 139.83 Mbp
70 188 3.86 Mbp 10 115.72 Mbp
80 270 2.37 Mbp 12 93.55 Mbp
90 421 1.10 Mbp 15 69.07 Mbp
100 - - - -
0.973x 896 2.41 Gbp 54 2.41 Gbp
NG based on genome size 2.47 Gbp.
Individual 4 Alternate Assembly
Version assembly_curated from 3 April 2020
mLynCan4.alt.cur.20200403.fasta.gz (425 MB)

Contigs Scaffolds
NG LG Len LG Len
10 596 0.29 Mbp 596 0.29 Mbp
20 1679 0.19 Mbp 1679 0.19 Mbp
30 3328 0.12 Mbp 3327 0.12 Mbp
40 5802 82.03 Kbp 5801 82.06 Kbp
50 9660 50.00 Kbp 9657 50.01 Kbp
60 - - - -
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.573x 15046 1.42 Gbp 15041 1.42 Gbp
NG based on genome size 2.47 Gbp.

Individual 4 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
mLynCan4.MT.20191003.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.