Mastacembelus armatus
tire-track eel
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid205130 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_900324485.3 | GCA_900700395.1 |
| ENA | GCA_900324485.3 | GCA_900700395.1 |
| UCSC Genome Browser | GCA_900324485.3 | GCA_900700395.1 |
public domain
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 116.08 Gbp | 153.39x | 79.367 GB |
| Arima | 147.40 Gbp | 194.77x | 71.281 GB |
| Bionano | 1619.79 Gbp | 2140.44x | 2.687 GB |
| PacBio SubReads | 29.95 Gbp | 39.57x | 53.849 GB |
Coverage based on genome size 0.76 Gbp.
Last upload on 9 March 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Mastacembelus_armatus/fMasArm1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Mastacembelus_armatus/fMasArm1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Mastacembelus_armatus/fMasArm1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Mastacembelus_armatus/fMasArm1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Mastacembelus_armatus/fMasArm1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Mastacembelus_armatus/fMasArm1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Mastacembelus_armatus/fMasArm1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 5 March 2019
fMasArm1.pri.cur.20190305.fasta.gz (169 MB)
Version assembly_curated from 5 March 2019
fMasArm1.pri.cur.20190305.fasta.gz (169 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 4 | 13.57 Mbp | 2 | 28.73 Mbp |
| 20 | 10 | 10.96 Mbp | 5 | 27.50 Mbp |
| 30 | 17 | 8.70 Mbp | 8 | 25.86 Mbp |
| 40 | 27 | 6.69 Mbp | 11 | 24.95 Mbp |
| 50 | 40 | 4.76 Mbp | 14 | 23.29 Mbp |
| 60 | 61 | 2.31 Mbp | 17 | 21.33 Mbp |
| 70 | 111 | 0.90 Mbp | 21 | 19.68 Mbp |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.765x | 360 | 0.58 Gbp | 122 | 0.59 Gbp |
NG based on genome size 0.76 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 5 March 2019
fMasArm1.alt.cur.20190305.fasta.gz (13 MB)
Version assembly_curated from 5 March 2019
fMasArm1.alt.cur.20190305.fasta.gz (13 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | - | - | - | - |
| 20 | - | - | - | - |
| 30 | - | - | - | - |
| 40 | - | - | - | - |
| 50 | - | - | - | - |
| 60 | - | - | - | - |
| 70 | - | - | - | - |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.058x | 1437 | 43.70 Mbp | 1437 | 43.70 Mbp |
NG based on genome size 0.76 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fMasArm1.MT.20191002.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 2 October 2019
fMasArm1.MT.20191002.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.