Mastacembelus armatus

tire-track eel


Information

NCBI Taxonomy Browser
Primary assembly in GenBank or ENA
Alternate assembly in GenBank or ENA
public domain

Raw Data

Datatype Approximate Coverage Download Size
10x153.39x79.367 GB
Arima194.77x71.281 GB
Bionano2140.44x2.687 GB
PacBio SubReads39.57x53.849 GB
Coverage based on genome size 0.76 Gbp.
Last upload on 9 March 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Mastacembelus_armatus/fMasArm1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Mastacembelus_armatus/fMasArm1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Mastacembelus_armatus/fMasArm1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Mastacembelus_armatus/fMasArm1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Primary assembly in GenBank or ENA
Alternate assembly in GenBank or ENA
Individual 1 Primary Assembly
Version assembly_curated from 5 March 2019
fMasArm1.pri.cur.20190305.fasta.gz (169 MB)

Contigs Scaffolds
NG LG Len LG Len
10 4 13.57 Mbp 2 28.73 Mbp
20 10 10.96 Mbp 5 27.50 Mbp
30 17 8.70 Mbp 8 25.86 Mbp
40 27 6.69 Mbp 11 24.95 Mbp
50 40 4.76 Mbp 14 23.29 Mbp
60 61 2.31 Mbp 17 21.33 Mbp
70 111 0.90 Mbp 21 19.68 Mbp
80 - - - -
90 - - - -
100 - - - -
0.765x 360 0.58 Gbp 122 0.59 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 5 March 2019
fMasArm1.alt.cur.20190305.fasta.gz (13 MB)

Contigs Scaffolds
NG LG Len LG Len
10 - - - -
20 - - - -
30 - - - -
40 - - - -
50 - - - -
60 - - - -
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.058x 1437 43.70 Mbp 1437 43.70 Mbp
NG based on genome size 0.76 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fMasArm1.MT.20191002.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.