Megalops cyprinoides
Indo-Pacific tarpon
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid118141 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_013368585.1 | GCA_013368575.1 |
| ENA | GCA_013368585.1 | GCA_013368575.1 |
| UCSC Genome Browser | GCA_013368585.1 | GCA_013368575.1 |
no copyright, public domain, user:Melanochromis (wikimedia)
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 89.41 Gbp | 81.79x | 44.681 GB |
| Bionano | 465.92 Gbp | 426.17x | 0.556 GB |
| PacBio SubReads | 114.07 Gbp | 104.34x | 203.205 GB |
Coverage based on genome size 1.09 Gbp.
Last upload on 10 October 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Megalops_cyprinoides/fMegCyp1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Megalops_cyprinoides/fMegCyp1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Megalops_cyprinoides/fMegCyp1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Megalops_cyprinoides/fMegCyp1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Megalops_cyprinoides/fMegCyp1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 24 April 2020
fMegCyp1.pri.cur.20200424.fasta.gz (279 MB)
Version assembly_curated from 24 April 2020
fMegCyp1.pri.cur.20200424.fasta.gz (279 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 1 | 47.00 Mbp | 1 | 70.00 Mbp |
| 20 | 4 | 40.48 Mbp | 3 | 47.00 Mbp |
| 30 | 7 | 33.85 Mbp | 5 | 41.38 Mbp |
| 40 | 11 | 27.65 Mbp | 8 | 39.13 Mbp |
| 50 | 15 | 23.34 Mbp | 11 | 37.50 Mbp |
| 60 | 20 | 20.87 Mbp | 14 | 34.50 Mbp |
| 70 | 26 | 14.28 Mbp | 18 | 29.99 Mbp |
| 80 | 38 | 6.81 Mbp | 21 | 27.87 Mbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.877x | 269 | 0.96 Gbp | 206 | 0.96 Gbp |
NG based on genome size 1.09 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 24 April 2020
fMegCyp1.alt.cur.20200424.fasta.gz (271 MB)
Version assembly_curated from 24 April 2020
fMegCyp1.alt.cur.20200424.fasta.gz (271 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 64 | 1.27 Mbp | 64 | 1.27 Mbp |
| 20 | 170 | 0.87 Mbp | 170 | 0.87 Mbp |
| 30 | 313 | 0.67 Mbp | 313 | 0.67 Mbp |
| 40 | 503 | 0.49 Mbp | 503 | 0.49 Mbp |
| 50 | 764 | 0.35 Mbp | 764 | 0.35 Mbp |
| 60 | 1142 | 0.23 Mbp | 1142 | 0.23 Mbp |
| 70 | 1769 | 0.13 Mbp | 1769 | 0.13 Mbp |
| 80 | 3039 | 56.39 Kbp | 3039 | 56.39 Kbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.842x | 4336 | 0.92 Gbp | 4333 | 0.92 Gbp |
NG based on genome size 1.09 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fMegCyp1.MT.20191002.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 2 October 2019
fMegCyp1.MT.20191002.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.