Melanotaenia boesemani

Boeseman's rainbowfish


Information

Resource
NCBI Taxonomy Browser NCBI:txid1250792

Raw Data

Datatype Approximate Coverage Download Size
10xN/A59.239 GB
ArimaN/A52.028 GB
BionanoN/A1.459 GB
PacBio SubReadsN/A107.420 GB
No genome size estimate available.
Last upload on 26 October 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Melanotaenia_boesemani/fMelBoe1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Melanotaenia_boesemani/fMelBoe1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Melanotaenia_boesemani/fMelBoe1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Melanotaenia_boesemani/fMelBoe1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_vgp_standard_1.6 from 19 November 2020
fMelBoe1.pri.asm.20201119.fasta.gz (251 MB)

Contigs Scaffolds
NG LG Len LG Len
10 3 22.79 Mbp 2 37.34 Mbp
20 7 19.88 Mbp 4 36.15 Mbp
30 12 14.69 Mbp 7 34.90 Mbp
40 19 12.20 Mbp 9 33.78 Mbp
50 27 9.29 Mbp 12 32.44 Mbp
60 39 5.51 Mbp 15 30.23 Mbp
70 58 3.90 Mbp 17 29.37 Mbp
80 87 2.42 Mbp 21 24.69 Mbp
90 142 0.95 Mbp 30 3.37 Mbp
100 561 165 bp 221 874 bp
1.000x 562 0.87 Gbp 222 0.88 Gbp
Individual 1 Alternate Assembly
Version assembly_vgp_standard_1.6 from 19 November 2020
fMelBoe1.alt.asm.20201119.fasta.gz (220 MB)

Contigs Scaffolds
NG LG Len LG Len
10 45 1.30 Mbp 45 1.30 Mbp
20 115 0.92 Mbp 114 0.93 Mbp
30 208 0.71 Mbp 208 0.71 Mbp
40 329 0.55 Mbp 328 0.55 Mbp
50 488 0.41 Mbp 487 0.41 Mbp
60 700 0.31 Mbp 699 0.31 Mbp
70 983 0.23 Mbp 981 0.23 Mbp
80 1370 0.16 Mbp 1366 0.17 Mbp
90 1928 0.11 Mbp 1921 0.11 Mbp
100 3134 1 bp 3123 485 bp
1.000x 3135 0.76 Gbp 3124 0.76 Gbp
NG based on each assembly size.
(No genome size estimate available.)
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fMelBoe1.MT.20191002.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.