Melanotaenia boesemani
Boeseman's rainbowfish
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid1250792 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_017639745.1 | GCA_017639755.1 |
| ENA | GCA_017639745.1 | GCA_017639755.1 |
| UCSC Genome Browser | GCA_017639745.1 | GCA_017639755.1 |
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 119.96 Gbp | 138.59x | 59.239 GB |
| Arima | 106.55 Gbp | 123.09x | 52.028 GB |
| Bionano | 816.68 Gbp | 943.51x | 1.459 GB |
| PacBio SubReads | 62.00 Gbp | 71.62x | 107.420 GB |
Coverage based on genome size 0.87 Gbp.
Last upload on 26 October 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Melanotaenia_boesemani/fMelBoe1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Melanotaenia_boesemani/fMelBoe1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Melanotaenia_boesemani/fMelBoe1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Melanotaenia_boesemani/fMelBoe1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Melanotaenia_boesemani/fMelBoe1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Melanotaenia_boesemani/fMelBoe1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Melanotaenia_boesemani/fMelBoe1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 12 March 2021
fMelBoe1.pri.cur.20210312.fasta.gz (248 MB)
Version assembly_curated from 12 March 2021
fMelBoe1.pri.cur.20210312.fasta.gz (248 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 3 | 22.44 Mbp | 2 | 41.08 Mbp |
| 20 | 7 | 18.58 Mbp | 4 | 39.49 Mbp |
| 30 | 13 | 14.01 Mbp | 6 | 39.29 Mbp |
| 40 | 19 | 12.20 Mbp | 8 | 38.00 Mbp |
| 50 | 27 | 9.30 Mbp | 10 | 37.88 Mbp |
| 60 | 40 | 5.51 Mbp | 13 | 35.46 Mbp |
| 70 | 59 | 3.87 Mbp | 15 | 34.71 Mbp |
| 80 | 88 | 2.36 Mbp | 18 | 31.82 Mbp |
| 90 | 140 | 1.13 Mbp | 20 | 30.54 Mbp |
| 100 | 531 | 165 bp | 91 | 874 bp |
| 1.000x | 532 | 0.86 Gbp | 92 | 0.87 Gbp |
NG based on genome size 0.87 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 12 March 2021
fMelBoe1.alt.cur.20210312.fasta.gz (221 MB)
Version assembly_curated from 12 March 2021
fMelBoe1.alt.cur.20210312.fasta.gz (221 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 46 | 1.28 Mbp | 45 | 1.31 Mbp |
| 20 | 117 | 0.91 Mbp | 115 | 0.93 Mbp |
| 30 | 212 | 0.71 Mbp | 209 | 0.72 Mbp |
| 40 | 334 | 0.55 Mbp | 331 | 0.55 Mbp |
| 50 | 496 | 0.41 Mbp | 492 | 0.41 Mbp |
| 60 | 712 | 0.31 Mbp | 708 | 0.31 Mbp |
| 70 | 1000 | 0.23 Mbp | 994 | 0.23 Mbp |
| 80 | 1395 | 0.16 Mbp | 1387 | 0.16 Mbp |
| 90 | 1966 | 0.11 Mbp | 1952 | 0.11 Mbp |
| 100 | 3238 | 420 bp | 3193 | 485 bp |
| 1.000x | 3239 | 0.76 Gbp | 3194 | 0.76 Gbp |
NG based on genome size 0.87 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fMelBoe1.MT.20191002.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 2 October 2019
fMelBoe1.MT.20191002.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.