Melanotaenia boesemani
Boeseman's rainbowfish
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid1250792 |
Raw Data
Datatype | Approximate Coverage | Download Size |
---|---|---|
10x | N/A | 59.239 GB |
Arima | N/A | 52.028 GB |
Bionano | N/A | 1.459 GB |
PacBio SubReads | N/A | 107.420 GB |
No genome size estimate available.
Last upload on 26 October 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Melanotaenia_boesemani/fMelBoe1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Melanotaenia_boesemani/fMelBoe1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Melanotaenia_boesemani/fMelBoe1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Melanotaenia_boesemani/fMelBoe1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Melanotaenia_boesemani/fMelBoe1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Melanotaenia_boesemani/fMelBoe1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Melanotaenia_boesemani/fMelBoe1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_vgp_standard_1.6 from 19 November 2020
fMelBoe1.pri.asm.20201119.fasta.gz (251 MB)
Version assembly_vgp_standard_1.6 from 19 November 2020
fMelBoe1.pri.asm.20201119.fasta.gz (251 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 22.79 Mbp | 2 | 37.34 Mbp |
20 | 7 | 19.88 Mbp | 4 | 36.15 Mbp |
30 | 12 | 14.69 Mbp | 7 | 34.90 Mbp |
40 | 19 | 12.20 Mbp | 9 | 33.78 Mbp |
50 | 27 | 9.29 Mbp | 12 | 32.44 Mbp |
60 | 39 | 5.51 Mbp | 15 | 30.23 Mbp |
70 | 58 | 3.90 Mbp | 17 | 29.37 Mbp |
80 | 87 | 2.42 Mbp | 21 | 24.69 Mbp |
90 | 142 | 0.95 Mbp | 30 | 3.37 Mbp |
100 | 561 | 165 bp | 221 | 874 bp |
1.000x | 562 | 0.87 Gbp | 222 | 0.88 Gbp |
Individual 1 Alternate Assembly
Version assembly_vgp_standard_1.6 from 19 November 2020
fMelBoe1.alt.asm.20201119.fasta.gz (220 MB)
Version assembly_vgp_standard_1.6 from 19 November 2020
fMelBoe1.alt.asm.20201119.fasta.gz (220 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 45 | 1.30 Mbp | 45 | 1.30 Mbp |
20 | 115 | 0.92 Mbp | 114 | 0.93 Mbp |
30 | 208 | 0.71 Mbp | 208 | 0.71 Mbp |
40 | 329 | 0.55 Mbp | 328 | 0.55 Mbp |
50 | 488 | 0.41 Mbp | 487 | 0.41 Mbp |
60 | 700 | 0.31 Mbp | 699 | 0.31 Mbp |
70 | 983 | 0.23 Mbp | 981 | 0.23 Mbp |
80 | 1370 | 0.16 Mbp | 1366 | 0.17 Mbp |
90 | 1928 | 0.11 Mbp | 1921 | 0.11 Mbp |
100 | 3134 | 1 bp | 3123 | 485 bp |
1.000x | 3135 | 0.76 Gbp | 3124 | 0.76 Gbp |
NG based on each assembly size.
(No genome size estimate available.)
(No genome size estimate available.)
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fMelBoe1.MT.20191002.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 2 October 2019
fMelBoe1.MT.20191002.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.