Merops nubicus

carmine bee-eater


Information

Resource
NCBI Taxonomy Browser NCBI:txid57421

Resource Primary Assembly Alternate Assembly
GenBank GCA_009819595.1 GCA_009819585.1
ENA GCA_009819595.1 GCA_009819585.1
UCSC Genome Browser GCA_009819595.1 GCA_009819585.1

CC BY-SA 3.0 Luc Viatour (wikimedia)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x130.67 Gbp100.51x66.335 GB
Arima143.53 Gbp110.41x76.002 GB
Bionano439.33 Gbp337.94x0.737 GB
PacBio SubReads78.16 Gbp60.12x134.080 GB
Coverage based on genome size 1.30 Gbp.
Last upload on 14 September 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Merops_nubicus/bMerNub1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Merops_nubicus/bMerNub1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Merops_nubicus/bMerNub1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Merops_nubicus/bMerNub1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 15 August 2019
bMerNub1.pri.cur.20190815.fasta.gz (334 MB)

Contigs Scaffolds
NG LG Len LG Len
10 3 31.89 Mbp 1 80.19 Mbp
20 8 25.81 Mbp 3 71.73 Mbp
30 13 20.62 Mbp 5 63.10 Mbp
40 21 13.87 Mbp 7 50.89 Mbp
50 32 11.28 Mbp 10 47.94 Mbp
60 46 7.95 Mbp 12 43.61 Mbp
70 71 3.77 Mbp 16 37.60 Mbp
80 121 1.71 Mbp 21 17.19 Mbp
90 - - - -
100 - - - -
0.879x 377 1.14 Gbp 108 1.15 Gbp
NG based on genome size 1.30 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 15 August 2019
bMerNub1.alt.cur.20190815.fasta.gz (332 MB)

Contigs Scaffolds
NG LG Len LG Len
10 15 6.08 Mbp 15 6.08 Mbp
20 43 3.79 Mbp 43 3.79 Mbp
30 83 2.92 Mbp 83 2.92 Mbp
40 135 2.13 Mbp 135 2.13 Mbp
50 206 1.58 Mbp 206 1.58 Mbp
60 311 0.96 Mbp 311 0.96 Mbp
70 496 0.49 Mbp 496 0.49 Mbp
80 1276 75.82 Kbp 1276 75.82 Kbp
90 - - - -
100 - - - -
0.863x 3296 1.12 Gbp 3296 1.12 Gbp
NG based on genome size 1.30 Gbp.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 18 September 2019
bMerNub1.MT.20190918.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.