Merops nubicus
carmine bee-eater
Information
CC BY-SA 3.0 Luc Viatour (wikimedia)
Raw Data
| Datatype | Approximate Coverage | Download Size |
|---|---|---|
| 10x | 100.51x | 66.335 GB |
| Arima | 110.41x | 76.002 GB |
| Bionano | 337.94x | 0.737 GB |
| PacBio SubReads | 60.12x | 134.080 GB |
Coverage based on genome size 1.30 Gbp.
Last upload on 14 September 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Merops_nubicus/bMerNub1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Merops_nubicus/bMerNub1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Merops_nubicus/bMerNub1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Merops_nubicus/bMerNub1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Merops_nubicus/bMerNub1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Merops_nubicus/bMerNub1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Merops_nubicus/bMerNub1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 15 August 2019
bMerNub1.pri.cur.20190815.fasta.gz (334 MB)
Version assembly_curated from 15 August 2019
bMerNub1.pri.cur.20190815.fasta.gz (334 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 3 | 31.89 Mbp | 1 | 80.19 Mbp |
| 20 | 8 | 25.81 Mbp | 3 | 71.73 Mbp |
| 30 | 13 | 20.62 Mbp | 5 | 63.10 Mbp |
| 40 | 21 | 13.87 Mbp | 7 | 50.89 Mbp |
| 50 | 32 | 11.28 Mbp | 10 | 47.94 Mbp |
| 60 | 46 | 7.95 Mbp | 12 | 43.61 Mbp |
| 70 | 71 | 3.77 Mbp | 16 | 37.60 Mbp |
| 80 | 121 | 1.71 Mbp | 21 | 17.19 Mbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.879x | 377 | 1.14 Gbp | 108 | 1.15 Gbp |
Individual 1 Alternate Assembly
Version assembly_curated from 15 August 2019
bMerNub1.alt.cur.20190815.fasta.gz (332 MB)
Version assembly_curated from 15 August 2019
bMerNub1.alt.cur.20190815.fasta.gz (332 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 15 | 6.08 Mbp | 15 | 6.08 Mbp |
| 20 | 43 | 3.79 Mbp | 43 | 3.79 Mbp |
| 30 | 83 | 2.92 Mbp | 83 | 2.92 Mbp |
| 40 | 135 | 2.13 Mbp | 135 | 2.13 Mbp |
| 50 | 206 | 1.58 Mbp | 206 | 1.58 Mbp |
| 60 | 311 | 0.96 Mbp | 311 | 0.96 Mbp |
| 70 | 496 | 0.49 Mbp | 496 | 0.49 Mbp |
| 80 | 1276 | 75.82 Kbp | 1276 | 75.82 Kbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.863x | 3296 | 1.12 Gbp | 3296 | 1.12 Gbp |
NG based on genome size 1.30 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 18 September 2019
bMerNub1.MT.20190918.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 18 September 2019
bMerNub1.MT.20190918.fasta.gz (5 KB)
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