Microcaecilia unicolor

tiny Cayenne caecilian


Information

NCBI Taxonomy Browser
Primary assembly in GenBank or ENA
Alternate assembly in GenBank or ENA
Copyright Mark Wilkinson, used with permission

Raw Data

Datatype Approximate Coverage Download Size
10xN/A242.655 GB
ArimaN/A166.471 GB
BionanoN/A2.704 GB
Dovetail GenomicsN/A151.277 GB
PacBio SubReadsN/A441.129 GB
No genome size estimate available.
Last upload on 30 January 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Microcaecilia_unicolor/aMicUni1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Microcaecilia_unicolor/aMicUni1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Microcaecilia_unicolor/aMicUni1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Microcaecilia_unicolor/aMicUni1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Microcaecilia_unicolor/aMicUni1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Primary assembly in GenBank or ENA
Alternate assembly in GenBank or ENA
Individual 1 Primary Assembly
Version assembly_curated from 23 May 2019
aMicUni1.pri.cur.20190523.fasta.gz (1 GB)

Contigs Scaffolds
NG LG Len LG Len
10 35 9.77 Mbp 0 0.77 Gbp
20 89 7.37 Mbp 1 0.66 Gbp
30 161 5.60 Mbp 1 0.66 Gbp
40 253 4.64 Mbp 2 0.54 Gbp
50 366 3.65 Mbp 3 376.15 Mbp
60 509 2.89 Mbp 5 346.41 Mbp
70 693 2.18 Mbp 6 311.29 Mbp
80 952 1.46 Mbp 8 228.14 Mbp
90 1374 0.81 Mbp 10 208.48 Mbp
100 3531 221 bp 1079 2.05 Kbp
1.000x 3532 4.64 Gbp 1080 4.69 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 23 May 2019
aMicUni1.alt.cur.20190523.fasta.gz (1 GB)

Contigs Scaffolds
NG LG Len LG Len
10 462 0.61 Mbp 462 0.61 Mbp
20 1160 0.47 Mbp 1160 0.47 Mbp
30 2044 0.38 Mbp 2044 0.38 Mbp
40 3138 0.30 Mbp 3138 0.30 Mbp
50 4494 0.25 Mbp 4494 0.25 Mbp
60 6188 0.19 Mbp 6188 0.19 Mbp
70 8348 0.15 Mbp 8348 0.15 Mbp
80 11211 0.11 Mbp 11211 0.11 Mbp
90 15305 72.40 Kbp 15305 72.40 Kbp
100 23870 230 bp 23869 230 bp
1.000x 23871 3.70 Gbp 23870 3.70 Gbp
NG based on each assembly size.
(No genome size estimate available.)
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
aMicUni1.MT.20191003.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.