Microcaecilia unicolor
tiny Cayenne caecilian
Information
No image
Raw Data
| Datatype | Approximate Coverage | Download Size |
|---|---|---|
| 10x | N/A | 242.655 GB |
| Arima | N/A | 166.471 GB |
| Bionano | N/A | 2.704 GB |
| Dovetail Genomics | N/A | 151.277 GB |
| PacBio Scraps | N/A | 660.845 GB |
| PacBio SubReads | N/A | 441.129 GB |
No genome size estimate available.
Last upload on 30 January 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Microcaecilia_unicolor/aMicUni1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Microcaecilia_unicolor/aMicUni1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Microcaecilia_unicolor/aMicUni1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Microcaecilia_unicolor/aMicUni1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Microcaecilia_unicolor/aMicUni1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Microcaecilia_unicolor/aMicUni1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Microcaecilia_unicolor/aMicUni1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Microcaecilia_unicolor/aMicUni1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Microcaecilia_unicolor/aMicUni1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 23 May 2019
aMicUni1.pri.cur.20190523.fasta.gz (1 GB)
Version assembly_curated from 23 May 2019
aMicUni1.pri.cur.20190523.fasta.gz (1 GB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 35 | 9.77 Mbp | 0 | 0.77 Gbp |
| 20 | 89 | 7.37 Mbp | 1 | 0.66 Gbp |
| 30 | 161 | 5.60 Mbp | 1 | 0.66 Gbp |
| 40 | 253 | 4.64 Mbp | 2 | 0.54 Gbp |
| 50 | 366 | 3.65 Mbp | 3 | 376.15 Mbp |
| 60 | 509 | 2.89 Mbp | 5 | 346.41 Mbp |
| 70 | 693 | 2.18 Mbp | 6 | 311.29 Mbp |
| 80 | 952 | 1.46 Mbp | 8 | 228.14 Mbp |
| 90 | 1374 | 0.81 Mbp | 10 | 208.48 Mbp |
| 100 | 3531 | 221 bp | 1079 | 2.05 Kbp |
| 1.000x | 3532 | 4.64 Gbp | 1080 | 4.69 Gbp |
Individual 1 Alternate Assembly
Version assembly_curated from 23 May 2019
aMicUni1.alt.cur.20190523.fasta.gz (1 GB)
Version assembly_curated from 23 May 2019
aMicUni1.alt.cur.20190523.fasta.gz (1 GB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 462 | 0.61 Mbp | 462 | 0.61 Mbp |
| 20 | 1160 | 0.47 Mbp | 1160 | 0.47 Mbp |
| 30 | 2044 | 0.38 Mbp | 2044 | 0.38 Mbp |
| 40 | 3138 | 0.30 Mbp | 3138 | 0.30 Mbp |
| 50 | 4494 | 0.25 Mbp | 4494 | 0.25 Mbp |
| 60 | 6188 | 0.19 Mbp | 6188 | 0.19 Mbp |
| 70 | 8348 | 0.15 Mbp | 8348 | 0.15 Mbp |
| 80 | 11211 | 0.11 Mbp | 11211 | 0.11 Mbp |
| 90 | 15305 | 72.40 Kbp | 15305 | 72.40 Kbp |
| 100 | 23870 | 230 bp | 23869 | 230 bp |
| 1.000x | 23871 | 3.70 Gbp | 23870 | 3.70 Gbp |
NG based on each assembly size.
(No genome size estimate available.)
(No genome size estimate available.)
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