Myripristis murdjan
pinecone soldierfish
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid586833 |
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | GCA_902150065.1 | GCA_902148815.1 |
ENA | GCA_902150065.1 | GCA_902148815.1 |
UCSC Genome Browser | GCA_902150065.1 | GCA_902148815.1 |
CC BY 2.0 Rickard Zerpe (flickr)
Raw Data
Datatype | Approximate Size | Download Size | |
---|---|---|---|
Bases | Coverage | ||
10x | 140.57 Gbp | 168.30x | 81.514 GB |
Arima | 136.84 Gbp | 163.83x | 84.273 GB |
Bionano | 1286.04 Gbp | 1539.69x | 1.851 GB |
PacBio SubReads | 49.41 Gbp | 59.16x | 85.729 GB |
Coverage based on genome size 0.84 Gbp.
Last upload on 1 May 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Myripristis_murdjan/fMyrMur1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Myripristis_murdjan/fMyrMur1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Myripristis_murdjan/fMyrMur1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Myripristis_murdjan/fMyrMur1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Myripristis_murdjan/fMyrMur1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Myripristis_murdjan/fMyrMur1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Myripristis_murdjan/fMyrMur1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 21 June 2019
fMyrMur1.pri.cur.20190621.fasta.gz (242 MB)
Version assembly_curated from 21 June 2019
fMyrMur1.pri.cur.20190621.fasta.gz (242 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 27.28 Mbp | 1 | 42.40 Mbp |
20 | 6 | 24.31 Mbp | 3 | 39.21 Mbp |
30 | 9 | 20.03 Mbp | 6 | 36.53 Mbp |
40 | 14 | 17.27 Mbp | 8 | 35.81 Mbp |
50 | 19 | 14.48 Mbp | 10 | 34.95 Mbp |
60 | 27 | 8.34 Mbp | 13 | 33.92 Mbp |
70 | 39 | 5.79 Mbp | 15 | 33.42 Mbp |
80 | 57 | 3.78 Mbp | 18 | 31.82 Mbp |
90 | 89 | 1.76 Mbp | 20 | 29.23 Mbp |
100 | 339 | 862 bp | 86 | 862 bp |
1.000x | 340 | 0.83 Gbp | 87 | 0.84 Gbp |
NG based on genome size 0.84 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 21 June 2019
fMyrMur1.alt.cur.20190621.fasta.gz (238 MB)
Version assembly_curated from 21 June 2019
fMyrMur1.alt.cur.20190621.fasta.gz (238 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 28 | 2.17 Mbp | 28 | 2.19 Mbp |
20 | 75 | 1.38 Mbp | 74 | 1.39 Mbp |
30 | 144 | 1.03 Mbp | 143 | 1.03 Mbp |
40 | 236 | 0.79 Mbp | 235 | 0.79 Mbp |
50 | 353 | 0.61 Mbp | 352 | 0.61 Mbp |
60 | 506 | 0.49 Mbp | 505 | 0.49 Mbp |
70 | 691 | 0.39 Mbp | 690 | 0.39 Mbp |
80 | 930 | 0.29 Mbp | 929 | 0.29 Mbp |
90 | 1284 | 0.18 Mbp | 1282 | 0.18 Mbp |
100 | 2198 | 481 bp | 2192 | 810 bp |
1.000x | 2199 | 0.82 Gbp | 2193 | 0.82 Gbp |
NG based on genome size 0.84 Gbp.
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