Nyctibius grandis
great potoo
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid48427 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_013368605.1 | GCA_013368595.1 |
| ENA | GCA_013368605.1 | GCA_013368595.1 |
| UCSC Genome Browser | GCA_013368605.1 | GCA_013368595.1 |
CC BY-NC-SA 2.0 Cláudio Dias Timm (flickr)
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 129.64 Gbp | 129.64x | 63.015 GB |
| Arima | 111.01 Gbp | 111.01x | 59.866 GB |
| Bionano | 448.15 Gbp | 448.15x | 0.797 GB |
| PacBio SubReads | 88.40 Gbp | 88.40x | 153.661 GB |
Coverage based on genome size 1.00 Gbp.
Last upload on 30 October 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Nyctibius_grandis/bNycGra1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Nyctibius_grandis/bNycGra1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Nyctibius_grandis/bNycGra1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Nyctibius_grandis/bNycGra1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Nyctibius_grandis/bNycGra1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Nyctibius_grandis/bNycGra1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Nyctibius_grandis/bNycGra1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 2 March 2020
bNycGra1.pri.cur.20200302.fasta.gz (366 MB)
Version assembly_curated from 2 March 2020
bNycGra1.pri.cur.20200302.fasta.gz (366 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 1 | 94.30 Mbp | 0 | 133.76 Mbp |
| 20 | 2 | 90.86 Mbp | 1 | 127.81 Mbp |
| 30 | 3 | 62.18 Mbp | 2 | 115.30 Mbp |
| 40 | 5 | 51.35 Mbp | 3 | 105.21 Mbp |
| 50 | 7 | 28.62 Mbp | 4 | 99.98 Mbp |
| 60 | 11 | 23.41 Mbp | 5 | 92.36 Mbp |
| 70 | 16 | 21.07 Mbp | 6 | 88.16 Mbp |
| 80 | 21 | 15.75 Mbp | 7 | 59.94 Mbp |
| 90 | 28 | 12.12 Mbp | 9 | 43.94 Mbp |
| 100 | 39 | 8.12 Mbp | 12 | 26.76 Mbp |
| 1.250x | 433 | 1.25 Gbp | 190 | 1.26 Gbp |
NG based on genome size 1.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 2 March 2020
bNycGra1.alt.cur.20200302.fasta.gz (309 MB)
Version assembly_curated from 2 March 2020
bNycGra1.alt.cur.20200302.fasta.gz (309 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 10 | 7.06 Mbp | 10 | 7.06 Mbp |
| 20 | 27 | 5.33 Mbp | 27 | 5.33 Mbp |
| 30 | 48 | 4.28 Mbp | 48 | 4.28 Mbp |
| 40 | 74 | 3.31 Mbp | 74 | 3.31 Mbp |
| 50 | 109 | 2.55 Mbp | 109 | 2.55 Mbp |
| 60 | 153 | 2.05 Mbp | 153 | 2.05 Mbp |
| 70 | 208 | 1.55 Mbp | 208 | 1.55 Mbp |
| 80 | 282 | 1.15 Mbp | 282 | 1.15 Mbp |
| 90 | 393 | 0.66 Mbp | 393 | 0.67 Mbp |
| 100 | 712 | 0.13 Mbp | 705 | 0.14 Mbp |
| 1.041x | 1409 | 1.04 Gbp | 1395 | 1.04 Gbp |
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
bNycGra1.MT.20191002.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 2 October 2019
bNycGra1.MT.20191002.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.