Nyctibius grandis

great potoo


Information

Resource
NCBI Taxonomy Browser NCBI:txid48427

CC BY-NC-SA 2.0 Cláudio Dias Timm (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10x129.64x63.015 GB
Arima111.01x59.866 GB
Bionano448.15x0.797 GB
PacBio SubReads88.40x153.661 GB
Coverage based on genome size 1.00 Gbp.
Last upload on 30 October 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Nyctibius_grandis/bNycGra1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Nyctibius_grandis/bNycGra1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Nyctibius_grandis/bNycGra1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Nyctibius_grandis/bNycGra1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 2 March 2020
bNycGra1.pri.cur.20200302.fasta.gz (366 MB)

Contigs Scaffolds
NG LG Len LG Len
10 1 94.30 Mbp 0 133.76 Mbp
20 2 90.86 Mbp 1 127.81 Mbp
30 3 62.18 Mbp 2 115.30 Mbp
40 5 51.35 Mbp 3 105.21 Mbp
50 7 28.62 Mbp 4 99.98 Mbp
60 11 23.41 Mbp 5 92.36 Mbp
70 16 21.07 Mbp 6 88.16 Mbp
80 21 15.75 Mbp 7 59.94 Mbp
90 28 12.12 Mbp 9 43.94 Mbp
100 39 8.12 Mbp 12 26.76 Mbp
1.250x 433 1.25 Gbp 190 1.26 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 2 March 2020
bNycGra1.alt.cur.20200302.fasta.gz (309 MB)

Contigs Scaffolds
NG LG Len LG Len
10 10 7.06 Mbp 10 7.06 Mbp
20 27 5.33 Mbp 27 5.33 Mbp
30 48 4.28 Mbp 48 4.28 Mbp
40 74 3.31 Mbp 74 3.31 Mbp
50 109 2.55 Mbp 109 2.55 Mbp
60 153 2.05 Mbp 153 2.05 Mbp
70 208 1.55 Mbp 208 1.55 Mbp
80 282 1.15 Mbp 282 1.15 Mbp
90 393 0.66 Mbp 393 0.67 Mbp
100 712 0.13 Mbp 705 0.14 Mbp
1.041x 1409 1.04 Gbp 1395 1.04 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
bNycGra1.MT.20191002.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.