Parambassis ranga

Indian glassy fish


Information

Resource
NCBI Taxonomy Browser NCBI:txid210632

Resource Primary Assembly Alternate Assembly
GenBank GCA_900651595.1
ENA GCA_900651595.1
UCSC Genome Browser GCA_900651595.1

CC BY-SA 2.5 opencage (wikimedia)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x127.79 Gbp231.91x81.181 GB
Arima58.97 Gbp107.01x29.917 GB
Bionano727.91 Gbp1321.04x1.081 GB
PacBio SubReads54.99 Gbp99.80x95.977 GB
Coverage based on genome size 0.55 Gbp.
Last upload on 29 August 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Parambassis_ranga/fParRan2/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Parambassis_ranga/fParRan2/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Parambassis_ranga/fParRan2/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Parambassis_ranga/fParRan2/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 2 Primary Assembly
Version assembly_curated from 5 December 2018
fParRan2.pri.cur.20181205.fasta.gz (144 MB)

Contigs Scaffolds
NG LG Len LG Len
10 3 12.29 Mbp 1 32.18 Mbp
20 8 10.80 Mbp 3 26.05 Mbp
30 13 9.15 Mbp 5 24.70 Mbp
40 21 6.50 Mbp 7 24.49 Mbp
50 30 5.08 Mbp 9 22.99 Mbp
60 42 4.13 Mbp 12 22.47 Mbp
70 59 2.51 Mbp 14 21.89 Mbp
80 88 1.31 Mbp 17 18.87 Mbp
90 167 0.38 Mbp 20 16.01 Mbp
100 1678 6 bp 155 1.17 Kbp
1.000x 1679 0.54 Gbp 156 0.55 Gbp
Individual 2 Alternate Assembly
Version assembly_curated from 5 December 2018
fParRan2.alt.cur.20181205.fasta.gz (140 MB)

Contigs Scaffolds
NG LG Len LG Len
10 26 1.40 Mbp 25 1.49 Mbp
20 69 0.97 Mbp 66 0.99 Mbp
30 128 0.68 Mbp 122 0.73 Mbp
40 210 0.52 Mbp 201 0.53 Mbp
50 315 0.41 Mbp 305 0.42 Mbp
60 450 0.32 Mbp 437 0.33 Mbp
70 630 0.23 Mbp 613 0.24 Mbp
80 876 0.17 Mbp 856 0.17 Mbp
90 1251 0.10 Mbp 1225 0.10 Mbp
100 2471 6 bp 2241 173 bp
1.000x 2472 484.49 Mbp 2242 486.55 Mbp
NG based on genome size 0.55 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_rockefeller from 16 December 2019
fParRan2.MT.20191216.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.