Periophthalmus magnuspinnatus
Korean giant-fin mudskipper
Information
Copyright Chul Lee, used with permission
Raw Data
| Datatype | Approximate Coverage | Download Size |
|---|---|---|
| 10x | 73.81x | 34.457 GB |
| Arima | 96.39x | 57.519 GB |
| Bionano | 743.85x | 1.419 GB |
| PacBio SubReads | 69.53x | 121.200 GB |
Coverage based on genome size 1.00 Gbp.
Last upload on 15 August 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 11 October 2019
fPerMag1.pri.cur.20191011.fasta.gz (213 MB)
Version assembly_curated from 11 October 2019
fPerMag1.pri.cur.20191011.fasta.gz (213 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 11 | 6.84 Mbp | 2 | 36.17 Mbp |
| 20 | 29 | 4.41 Mbp | 5 | 34.91 Mbp |
| 30 | 58 | 2.86 Mbp | 8 | 33.84 Mbp |
| 40 | 99 | 2.12 Mbp | 11 | 32.62 Mbp |
| 50 | 155 | 1.54 Mbp | 14 | 30.44 Mbp |
| 60 | 236 | 0.98 Mbp | 18 | 28.38 Mbp |
| 70 | 389 | 0.40 Mbp | 21 | 24.17 Mbp |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.745x | 823 | 0.75 Gbp | 123 | 0.75 Gbp |
Individual 1 Alternate Assembly
Version assembly_curated from 11 October 2019
fPerMag1.alt.cur.20191011.fasta.gz (202 MB)
Version assembly_curated from 11 October 2019
fPerMag1.alt.cur.20191011.fasta.gz (202 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 56 | 1.26 Mbp | 56 | 1.26 Mbp |
| 20 | 158 | 0.80 Mbp | 158 | 0.80 Mbp |
| 30 | 309 | 0.56 Mbp | 309 | 0.56 Mbp |
| 40 | 521 | 0.40 Mbp | 521 | 0.40 Mbp |
| 50 | 828 | 0.27 Mbp | 828 | 0.27 Mbp |
| 60 | 1334 | 0.14 Mbp | 1334 | 0.14 Mbp |
| 70 | - | - | - | - |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.699x | 2800 | 0.70 Gbp | 2799 | 0.70 Gbp |
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fPerMag1.MT.20191002.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 2 October 2019
fPerMag1.MT.20191002.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.