Periophthalmus magnuspinnatus

Korean giant-fin mudskipper


Information

Resource
NCBI Taxonomy Browser NCBI:txid409849

Resource Primary Assembly Alternate Assembly
GenBank GCA_009829125.1 GCA_009829135.1
ENA GCA_009829125.1 GCA_009829135.1
UCSC Genome Browser GCA_009829125.1 GCA_009829135.1

Copyright Chul Lee, used with permission

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x73.81 Gbp73.81x34.457 GB
Arima96.39 Gbp96.39x57.519 GB
Bionano743.85 Gbp743.85x1.419 GB
PacBio SubReads69.53 Gbp69.53x121.200 GB
Coverage based on genome size 1.00 Gbp.
Last upload on 15 August 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Periophthalmus_magnuspinnatus/fPerMag1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 11 October 2019
fPerMag1.pri.cur.20191011.fasta.gz (213 MB)

Contigs Scaffolds
NG LG Len LG Len
10 11 6.84 Mbp 2 36.17 Mbp
20 29 4.41 Mbp 5 34.91 Mbp
30 58 2.86 Mbp 8 33.84 Mbp
40 99 2.12 Mbp 11 32.62 Mbp
50 155 1.54 Mbp 14 30.44 Mbp
60 236 0.98 Mbp 18 28.38 Mbp
70 389 0.40 Mbp 21 24.17 Mbp
80 - - - -
90 - - - -
100 - - - -
0.745x 823 0.75 Gbp 123 0.75 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 11 October 2019
fPerMag1.alt.cur.20191011.fasta.gz (202 MB)

Contigs Scaffolds
NG LG Len LG Len
10 56 1.26 Mbp 56 1.26 Mbp
20 158 0.80 Mbp 158 0.80 Mbp
30 309 0.56 Mbp 309 0.56 Mbp
40 521 0.40 Mbp 521 0.40 Mbp
50 828 0.27 Mbp 828 0.27 Mbp
60 1334 0.14 Mbp 1334 0.14 Mbp
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.699x 2800 0.70 Gbp 2799 0.70 Gbp
NG based on genome size 1.00 Gbp.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fPerMag1.MT.20191002.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.