Phocoena sinus
vaquita
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid42100 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_008692025.1 | GCA_008692045.1 |
| ENA | GCA_008692025.1 | GCA_008692045.1 |
| UCSC Genome Browser | GCA_008692025.1 | GCA_008692045.1 |
public domain
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 201.79 Gbp | 67.26x | 104.510 GB |
| Arima | 521.14 Gbp | 173.71x | 254.886 GB |
| Bionano | 1190.43 Gbp | 396.81x | 2.220 GB |
| PacBio SubReads | 326.80 Gbp | 108.93x | 561.436 GB |
Coverage based on genome size 3.00 Gbp.
Last upload on 9 May 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Phocoena_sinus/mPhoSin1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Phocoena_sinus/mPhoSin1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Phocoena_sinus/mPhoSin1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Phocoena_sinus/mPhoSin1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Phocoena_sinus/mPhoSin1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Phocoena_sinus/mPhoSin1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Phocoena_sinus/mPhoSin1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 23 July 2019
mPhoSin1.pri.cur.20190723.fasta.gz (690 MB)
Version assembly_curated from 23 July 2019
mPhoSin1.pri.cur.20190723.fasta.gz (690 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 5 | 37.50 Mbp | 1 | 178.56 Mbp |
| 20 | 15 | 30.57 Mbp | 3 | 146.13 Mbp |
| 30 | 26 | 24.60 Mbp | 5 | 131.66 Mbp |
| 40 | 39 | 19.98 Mbp | 8 | 110.41 Mbp |
| 50 | 55 | 16.12 Mbp | 10 | 104.12 Mbp |
| 60 | 76 | 12.35 Mbp | 14 | 89.76 Mbp |
| 70 | 106 | 7.41 Mbp | 17 | 79.89 Mbp |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.788x | 276 | 2.36 Gbp | 64 | 2.37 Gbp |
NG based on genome size 3.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 23 July 2019
mPhoSin1.alt.cur.20190723.fasta.gz (299 MB)
Version assembly_curated from 23 July 2019
mPhoSin1.alt.cur.20190723.fasta.gz (299 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 957 | 0.20 Mbp | 957 | 0.20 Mbp |
| 20 | 2973 | 0.11 Mbp | 2973 | 0.11 Mbp |
| 30 | 6946 | 50.89 Kbp | 6946 | 50.89 Kbp |
| 40 | - | - | - | - |
| 50 | - | - | - | - |
| 60 | - | - | - | - |
| 70 | - | - | - | - |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.332x | 9470 | 1.00 Gbp | 9469 | 1.00 Gbp |
NG based on genome size 3.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
mPhoSin1.MT.20191003.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 3 October 2019
mPhoSin1.MT.20191003.fasta.gz (5 KB)
Data Use Policy
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please abide by the Data Use Policy
and contact us with any questions.