Raw Data
| Datatype | Approximate Coverage | Download Size |
|---|---|---|
| 10x | 67.26x | 104.510 GB |
| Arima | 173.71x | 254.886 GB |
| Bionano | 396.81x | 2.220 GB |
| PacBio Scraps | N/A | 612.464 GB |
| PacBio SubReads | 108.93x | 561.436 GB |
Coverage based on genome size 3.00 Gbp.
Last upload on 9 May 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Phocoena_sinus/mPhoSin1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Phocoena_sinus/mPhoSin1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Phocoena_sinus/mPhoSin1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Phocoena_sinus/mPhoSin1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Phocoena_sinus/mPhoSin1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Phocoena_sinus/mPhoSin1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Phocoena_sinus/mPhoSin1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_vgp_standard_1.5 from 31 May 2019
mPhoSin1.pri.asm.20190531.fasta.gz (697 MB)
Version assembly_vgp_standard_1.5 from 31 May 2019
mPhoSin1.pri.asm.20190531.fasta.gz (697 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 5 | 37.50 Mbp | 1 | 178.56 Mbp |
| 20 | 15 | 30.57 Mbp | 3 | 131.66 Mbp |
| 30 | 26 | 24.60 Mbp | 6 | 110.41 Mbp |
| 40 | 39 | 19.98 Mbp | 8 | 102.83 Mbp |
| 50 | 55 | 16.12 Mbp | 12 | 89.76 Mbp |
| 60 | 76 | 12.35 Mbp | 15 | 85.25 Mbp |
| 70 | 106 | 7.41 Mbp | 19 | 46.87 Mbp |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.788x | 274 | 2.36 Gbp | 73 | 2.37 Gbp |
Individual 1 Alternate Assembly
Version assembly_vgp_standard_1.5 from 31 May 2019
mPhoSin1.alt.asm.20190531.fasta.gz (298 MB)
Version assembly_vgp_standard_1.5 from 31 May 2019
mPhoSin1.alt.asm.20190531.fasta.gz (298 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 957 | 0.20 Mbp | 957 | 0.20 Mbp |
| 20 | 2973 | 0.11 Mbp | 2973 | 0.11 Mbp |
| 30 | 6946 | 50.89 Kbp | 6946 | 50.89 Kbp |
| 40 | - | - | - | - |
| 50 | - | - | - | - |
| 60 | - | - | - | - |
| 70 | - | - | - | - |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.332x | 9469 | 1.00 Gbp | 9469 | 1.00 Gbp |
NG based on genome size 3.00 Gbp.
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.