Phocoena sinus

vaquita


Information

Resource
NCBI Taxonomy Browser NCBI:txid42100

Resource Primary Assembly Alternate Assembly
GenBank GCA_008692025.1 GCA_008692045.1
ENA GCA_008692025.1 GCA_008692045.1
UCSC Genome Browser GCA_008692025.1 GCA_008692045.1

public domain

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x201.79 Gbp67.26x104.510 GB
Arima521.14 Gbp173.71x254.886 GB
Bionano1190.43 Gbp396.81x2.220 GB
PacBio SubReads326.80 Gbp108.93x561.436 GB
Coverage based on genome size 3.00 Gbp.
Last upload on 10 February 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Phocoena_sinus/mPhoSin1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Phocoena_sinus/mPhoSin1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Phocoena_sinus/mPhoSin1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Phocoena_sinus/mPhoSin1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 23 July 2019
mPhoSin1.pri.cur.20190723.fasta.gz (690 MB)

Contigs Scaffolds
NG LG Len LG Len
10 5 37.50 Mbp 1 178.56 Mbp
20 15 30.57 Mbp 3 146.13 Mbp
30 26 24.60 Mbp 5 131.66 Mbp
40 39 19.98 Mbp 8 110.41 Mbp
50 55 16.12 Mbp 10 104.12 Mbp
60 76 12.35 Mbp 14 89.76 Mbp
70 106 7.41 Mbp 17 79.89 Mbp
80 - - - -
90 - - - -
100 - - - -
0.788x 276 2.36 Gbp 64 2.37 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 23 July 2019
mPhoSin1.alt.cur.20190723.fasta.gz (299 MB)

Contigs Scaffolds
NG LG Len LG Len
10 957 0.20 Mbp 957 0.20 Mbp
20 2973 0.11 Mbp 2973 0.11 Mbp
30 6946 50.89 Kbp 6946 50.89 Kbp
40 - - - -
50 - - - -
60 - - - -
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.332x 9470 1.00 Gbp 9469 1.00 Gbp
NG based on genome size 3.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_mt_rockefeller from 2019-23-07
mPhoSin1.MT.20192307.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.