Pholidichthys leucotaenia

Convict blenny


Information

Resource
NCBI Taxonomy Browser NCBI:txid390368

Raw Data

Datatype Approximate Coverage Download Size
10xN/A183.052 GB
ArimaN/A227.215 GB
BionanoN/A0.856 GB
PacBio SubReadsN/A1076.618 GB
No genome size estimate available.
Last upload on 17 September 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_vgp_standard_1.6 from 12 October 2020
fPhoLeu1.pri.asm.20201012.fasta.gz (2 GB)

Contigs Scaffolds
NG LG Len LG Len
10 31 14.79 Mbp 1 251.62 Mbp
20 79 11.01 Mbp 6 137.11 Mbp
30 139 9.12 Mbp 11 105.38 Mbp
40 213 7.36 Mbp 17 90.89 Mbp
50 304 5.87 Mbp 24 75.09 Mbp
60 415 4.78 Mbp 34 50.32 Mbp
70 562 3.58 Mbp 49 35.58 Mbp
80 759 2.56 Mbp 71 20.04 Mbp
90 1069 1.41 Mbp 115 9.20 Mbp
100 3132 1 bp 879 766 bp
1.000x 3133 5.98 Gbp 880 6.08 Gbp
Individual 1 Alternate Assembly
Version assembly_vgp_standard_1.6 from 12 October 2020
fPhoLeu1.alt.asm.20201012.fasta.gz (560 MB)

Contigs Scaffolds
NG LG Len LG Len
10 347 0.40 Mbp 342 0.40 Mbp
20 897 0.29 Mbp 887 0.29 Mbp
30 1631 0.22 Mbp 1614 0.22 Mbp
40 2582 0.17 Mbp 2557 0.18 Mbp
50 3804 0.13 Mbp 3769 0.14 Mbp
60 5382 0.10 Mbp 5335 0.10 Mbp
70 7471 76.96 Kbp 7406 77.50 Kbp
80 10327 55.19 Kbp 10241 55.66 Kbp
90 14418 37.80 Kbp 14311 37.96 Kbp
100 21557 1 bp 21415 134 bp
1.000x 21558 1.86 Gbp 21416 1.86 Gbp
NG based on each assembly size.
(No genome size estimate available.)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.