Raw Data
Datatype | Approximate Coverage | Download Size |
---|---|---|
10x | N/A | 183.052 GB |
Arima | N/A | 227.215 GB |
Bionano | N/A | 0.856 GB |
PacBio SubReads | N/A | 1076.618 GB |
No genome size estimate available.
Last upload on 17 September 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pholidichthys_leucotaenia/fPhoLeu1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_vgp_standard_1.6 from 12 October 2020
fPhoLeu1.pri.asm.20201012.fasta.gz (2 GB)
Version assembly_vgp_standard_1.6 from 12 October 2020
fPhoLeu1.pri.asm.20201012.fasta.gz (2 GB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 31 | 14.79 Mbp | 1 | 251.62 Mbp |
20 | 79 | 11.01 Mbp | 6 | 137.11 Mbp |
30 | 139 | 9.12 Mbp | 11 | 105.38 Mbp |
40 | 213 | 7.36 Mbp | 17 | 90.89 Mbp |
50 | 304 | 5.87 Mbp | 24 | 75.09 Mbp |
60 | 415 | 4.78 Mbp | 34 | 50.32 Mbp |
70 | 562 | 3.58 Mbp | 49 | 35.58 Mbp |
80 | 759 | 2.56 Mbp | 71 | 20.04 Mbp |
90 | 1069 | 1.41 Mbp | 115 | 9.20 Mbp |
100 | 3132 | 1 bp | 879 | 766 bp |
1.000x | 3133 | 5.98 Gbp | 880 | 6.08 Gbp |
Individual 1 Alternate Assembly
Version assembly_vgp_standard_1.6 from 12 October 2020
fPhoLeu1.alt.asm.20201012.fasta.gz (560 MB)
Version assembly_vgp_standard_1.6 from 12 October 2020
fPhoLeu1.alt.asm.20201012.fasta.gz (560 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 347 | 0.40 Mbp | 342 | 0.40 Mbp |
20 | 897 | 0.29 Mbp | 887 | 0.29 Mbp |
30 | 1631 | 0.22 Mbp | 1614 | 0.22 Mbp |
40 | 2582 | 0.17 Mbp | 2557 | 0.18 Mbp |
50 | 3804 | 0.13 Mbp | 3769 | 0.14 Mbp |
60 | 5382 | 0.10 Mbp | 5335 | 0.10 Mbp |
70 | 7471 | 76.96 Kbp | 7406 | 77.50 Kbp |
80 | 10327 | 55.19 Kbp | 10241 | 55.66 Kbp |
90 | 14418 | 37.80 Kbp | 14311 | 37.96 Kbp |
100 | 21557 | 1 bp | 21415 | 134 bp |
1.000x | 21558 | 1.86 Gbp | 21416 | 1.86 Gbp |
NG based on each assembly size.
(No genome size estimate available.)
(No genome size estimate available.)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.