Phyllostomus discolor
pale spear-nosed bat
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid89673 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_004126475.3 | GCA_004115245.2 |
| ENA | GCA_004126475.3 | GCA_004115245.2 |
| UCSC Genome Browser | GCA_004126475.3 | GCA_004115245.2 |
CC BY-SA 4.0 Juan Carlos Vargas Mena (wikimedia)
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 243.07 Gbp | 109.80x | 145.428 GB |
| Arima | 192.11 Gbp | 86.78x | 99.838 GB |
| Bionano | 1078.91 Gbp | 487.36x | 1.416 GB |
| PacBio SubReads | 163.04 Gbp | 73.65x | 292.405 GB |
Coverage based on genome size 2.21 Gbp.
Last upload on 28 May 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Phyllostomus_discolor/mPhyDis1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Phyllostomus_discolor/mPhyDis1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Phyllostomus_discolor/mPhyDis1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Phyllostomus_discolor/mPhyDis1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Phyllostomus_discolor/mPhyDis1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Phyllostomus_discolor/mPhyDis1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Phyllostomus_discolor/mPhyDis1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 4 May 2020
mPhyDis1.pri.cur.20200504.fasta.gz (613 MB)
Version assembly_curated from 4 May 2020
mPhyDis1.pri.cur.20200504.fasta.gz (613 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 11 | 16.53 Mbp | 1 | 217.37 Mbp |
| 20 | 26 | 12.27 Mbp | 2 | 214.90 Mbp |
| 30 | 46 | 9.82 Mbp | 3 | 209.86 Mbp |
| 40 | 71 | 8.12 Mbp | 4 | 175.15 Mbp |
| 50 | 102 | 6.38 Mbp | 5 | 171.74 Mbp |
| 60 | 141 | 4.64 Mbp | 6 | 139.25 Mbp |
| 70 | 198 | 3.31 Mbp | 8 | 107.34 Mbp |
| 80 | 281 | 2.04 Mbp | 11 | 95.22 Mbp |
| 90 | 460 | 0.71 Mbp | 13 | 77.04 Mbp |
| 100 | - | - | - | - |
| 0.946x | 961 | 2.09 Gbp | 77 | 2.11 Gbp |
NG based on genome size 2.21 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 4 May 2020
mPhyDis1.alt.cur.20200504.fasta.gz (608 MB)
Version assembly_curated from 4 May 2020
mPhyDis1.alt.cur.20200504.fasta.gz (608 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 61 | 2.82 Mbp | 61 | 2.82 Mbp |
| 20 | 157 | 1.94 Mbp | 157 | 1.94 Mbp |
| 30 | 289 | 1.46 Mbp | 289 | 1.46 Mbp |
| 40 | 464 | 1.11 Mbp | 464 | 1.11 Mbp |
| 50 | 693 | 0.84 Mbp | 693 | 0.84 Mbp |
| 60 | 1005 | 0.61 Mbp | 1005 | 0.61 Mbp |
| 70 | 1459 | 0.39 Mbp | 1459 | 0.39 Mbp |
| 80 | 2302 | 0.16 Mbp | 2300 | 0.17 Mbp |
| 90 | 6922 | 23.22 Kbp | 6884 | 23.27 Kbp |
| 100 | - | - | - | - |
| 0.927x | 10895 | 2.05 Gbp | 10857 | 2.05 Gbp |
NG based on genome size 2.21 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
mPhyDis1.MT.20191003.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 3 October 2019
mPhyDis1.MT.20191003.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.