Phyllostomus discolor

pale spear-nosed bat


Information

NCBI Taxonomy Browser
Primary assembly in GenBank or ENA
Alternate assembly in GenBank or ENA
CC BY-SA 4.0 Juan Carlos Vargas Mena (wikimedia)

Raw Data

Datatype Approximate Coverage Download Size
10x109.80x145.428 GB
Arima86.78x99.838 GB
Bionano487.36x1.416 GB
PacBio SubReads73.65x292.405 GB
Coverage based on genome size 2.21 Gbp.
Last upload on 28 May 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Phyllostomus_discolor/mPhyDis1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Phyllostomus_discolor/mPhyDis1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Phyllostomus_discolor/mPhyDis1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Phyllostomus_discolor/mPhyDis1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Primary assembly in GenBank or ENA
Alternate assembly in GenBank or ENA
Individual 1 Primary Assembly
Version assembly_curated from 29 November 2019
mPhyDis1.pri.cur.20191129.fasta.gz (613 MB)

Contigs Scaffolds
NG LG Len LG Len
10 11 16.53 Mbp 1 217.37 Mbp
20 26 12.27 Mbp 2 214.90 Mbp
30 46 9.82 Mbp 3 209.86 Mbp
40 71 8.12 Mbp 4 175.15 Mbp
50 102 6.38 Mbp 5 171.74 Mbp
60 141 4.64 Mbp 6 139.25 Mbp
70 198 3.31 Mbp 8 107.34 Mbp
80 281 2.04 Mbp 11 95.22 Mbp
90 460 0.71 Mbp 13 77.04 Mbp
100 - - - -
0.946x 961 2.09 Gbp 77 2.11 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 29 November 2019
mPhyDis1.alt.cur.20191129.fasta.gz (608 MB)

Contigs Scaffolds
NG LG Len LG Len
10 61 2.82 Mbp 61 2.82 Mbp
20 157 1.94 Mbp 157 1.94 Mbp
30 289 1.46 Mbp 289 1.46 Mbp
40 464 1.11 Mbp 464 1.11 Mbp
50 693 0.84 Mbp 693 0.84 Mbp
60 1005 0.61 Mbp 1005 0.61 Mbp
70 1459 0.39 Mbp 1459 0.39 Mbp
80 2302 0.16 Mbp 2300 0.17 Mbp
90 6922 23.22 Kbp 6884 23.27 Kbp
100 - - - -
0.927x 10895 2.05 Gbp 10857 2.05 Gbp
NG based on genome size 2.21 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
mPhyDis1.MT.20191003.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.