Pipistrellus kuhlii
Kuhl's pipistrelle
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid59472 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_014108245.1 | |
| ENA | GCA_014108245.1 | |
| UCSC Genome Browser | GCA_014108245.1 |
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 95.50 Gbp | 53.78x | 59.271 GB |
| Bionano | 1418.65 Gbp | 798.92x | 2.136 GB |
| PacBio SubReads | 144.77 Gbp | 81.53x | 253.486 GB |
| Phase Genomics | 30.97 Gbp | 17.44x | 17.157 GB |
Coverage based on genome size 1.78 Gbp.
Last upload on 27 November 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/phase/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/phase/ .
Assemblies
Individual 1 Primary Assembly
Version assembly_dresden_DAmar1.0 from 24 April 2019
mPipKuh1.pri.asm.20190424.fasta.gz (562 MB)
Version assembly_dresden_DAmar1.0 from 24 April 2019
mPipKuh1.pri.asm.20190424.fasta.gz (562 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 4 | 34.46 Mbp | 0 | 197.21 Mbp |
| 20 | 9 | 28.49 Mbp | 1 | 189.23 Mbp |
| 30 | 18 | 18.93 Mbp | 2 | 187.11 Mbp |
| 40 | 28 | 14.71 Mbp | 4 | 83.51 Mbp |
| 50 | 43 | 10.24 Mbp | 6 | 80.24 Mbp |
| 60 | 61 | 8.52 Mbp | 9 | 57.45 Mbp |
| 70 | 88 | 5.20 Mbp | 12 | 51.07 Mbp |
| 80 | 132 | 3.14 Mbp | 16 | 30.60 Mbp |
| 90 | 219 | 1.25 Mbp | 30 | 6.78 Mbp |
| 100 | - | - | 201 | 19.24 Kbp |
| 0.993x | 596 | 1.76 Gbp | 202 | 1.78 Gbp |
NG based on genome size 1.78 Gbp.
Individual 1 Alternate Assembly
No alternate assembly available.
No alternate assembly available.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 December 2019
mPipKuh1.MT.20191204.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 4 December 2019
mPipKuh1.MT.20191204.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.