Pipistrellus kuhlii

Kuhl's pipistrelle


Information

Resource
NCBI Taxonomy Browser NCBI:txid59472

Raw Data

Datatype Approximate Coverage Download Size
10x53.78x59.271 GB
Bionano798.92x2.136 GB
PacBio SubReads81.53x253.486 GB
Phase Genomics17.44x17.157 GB
Coverage based on genome size 1.78 Gbp.
Last upload on 27 November 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/phase/ .

Assemblies

Individual 1 Primary Assembly
Version assembly_dresden_DAmar1.0 from 24 April 2019
mPipKuh1.pri.asm.20190424.fasta.gz (562 MB)

Contigs Scaffolds
NG LG Len LG Len
10 4 34.46 Mbp 0 197.21 Mbp
20 9 28.49 Mbp 1 189.23 Mbp
30 18 18.93 Mbp 2 187.11 Mbp
40 28 14.71 Mbp 4 83.51 Mbp
50 43 10.24 Mbp 6 80.24 Mbp
60 61 8.52 Mbp 9 57.45 Mbp
70 88 5.20 Mbp 12 51.07 Mbp
80 132 3.14 Mbp 16 30.60 Mbp
90 219 1.25 Mbp 30 6.78 Mbp
100 - - 201 19.24 Kbp
0.993x 596 1.76 Gbp 202 1.78 Gbp
Individual 1 Alternate Assembly
No alternate assembly available.

NG based on genome size 1.78 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 December 2019
mPipKuh1.MT.20191204.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.