Pipistrellus kuhlii
Kuhl's pipistrelle
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid59472 |
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | GCA_014108245.1 | |
ENA | GCA_014108245.1 | |
UCSC Genome Browser | GCA_014108245.1 |
Raw Data
Datatype | Approximate Size | Download Size | |
---|---|---|---|
Bases | Coverage | ||
10x | 95.50 Gbp | 53.78x | 59.271 GB |
Bionano | 1418.65 Gbp | 798.92x | 2.136 GB |
PacBio SubReads | 144.77 Gbp | 81.53x | 253.486 GB |
Phase Genomics | 30.97 Gbp | 17.44x | 17.157 GB |
Coverage based on genome size 1.78 Gbp.
Last upload on 27 November 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/phase/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Pipistrellus_kuhlii/mPipKuh1/genomic_data/phase/ .
Assemblies
Individual 1 Primary Assembly
Version assembly_dresden_DAmar1.0 from 24 April 2019
mPipKuh1.pri.asm.20190424.fasta.gz (562 MB)
Version assembly_dresden_DAmar1.0 from 24 April 2019
mPipKuh1.pri.asm.20190424.fasta.gz (562 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 4 | 34.46 Mbp | 0 | 197.21 Mbp |
20 | 9 | 28.49 Mbp | 1 | 189.23 Mbp |
30 | 18 | 18.93 Mbp | 2 | 187.11 Mbp |
40 | 28 | 14.71 Mbp | 4 | 83.51 Mbp |
50 | 43 | 10.24 Mbp | 6 | 80.24 Mbp |
60 | 61 | 8.52 Mbp | 9 | 57.45 Mbp |
70 | 88 | 5.20 Mbp | 12 | 51.07 Mbp |
80 | 132 | 3.14 Mbp | 16 | 30.60 Mbp |
90 | 219 | 1.25 Mbp | 30 | 6.78 Mbp |
100 | - | - | 201 | 19.24 Kbp |
0.993x | 596 | 1.76 Gbp | 202 | 1.78 Gbp |
NG based on genome size 1.78 Gbp.
Individual 1 Alternate Assembly
No alternate assembly available.
No alternate assembly available.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 December 2019
mPipKuh1.MT.20191204.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 4 December 2019
mPipKuh1.MT.20191204.fasta.gz (5 KB)
Data Use Policy
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please abide by the Data Use Policy
and contact us with any questions.