Pluvialis apricaria
European golden plover
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid670352 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_017639485.1 | GCA_017639475.1 |
| ENA | GCA_017639485.1 | GCA_017639475.1 |
| UCSC Genome Browser | GCA_017639485.1 | GCA_017639475.1 |
CC BY 2.0 Ómar Runólfsson (Wikimedia)
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 98.86 Gbp | 98.86x | 50.342 GB |
| Arima | 88.94 Gbp | 88.94x | 48.604 GB |
| Bionano | 473.49 Gbp | 473.49x | 0.804 GB |
| PacBio SubReads | 98.23 Gbp | 98.23x | 175.523 GB |
Coverage based on genome size 1.00 Gbp.
Last upload on 4 March 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Pluvialis_apricaria/bPluApr1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pluvialis_apricaria/bPluApr1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pluvialis_apricaria/bPluApr1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pluvialis_apricaria/bPluApr1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Pluvialis_apricaria/bPluApr1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pluvialis_apricaria/bPluApr1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pluvialis_apricaria/bPluApr1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 28 July 2020
bPluApr1.pri.cur.20200728.fasta.gz (363 MB)
Version assembly_curated from 28 July 2020
bPluApr1.pri.cur.20200728.fasta.gz (363 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 1 | 53.74 Mbp | 0 | 222.69 Mbp |
| 20 | 3 | 33.19 Mbp | 0 | 222.69 Mbp |
| 30 | 7 | 26.50 Mbp | 1 | 170.65 Mbp |
| 40 | 11 | 23.37 Mbp | 2 | 130.37 Mbp |
| 50 | 16 | 19.96 Mbp | 2 | 130.37 Mbp |
| 60 | 21 | 16.73 Mbp | 3 | 87.94 Mbp |
| 70 | 28 | 13.66 Mbp | 5 | 82.58 Mbp |
| 80 | 35 | 11.85 Mbp | 6 | 73.76 Mbp |
| 90 | 46 | 7.26 Mbp | 8 | 32.00 Mbp |
| 100 | 62 | 5.29 Mbp | 11 | 25.54 Mbp |
| 1.235x | 374 | 1.24 Gbp | 106 | 1.25 Gbp |
NG based on genome size 1.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 28 July 2020
bPluApr1.alt.cur.20200728.fasta.gz (320 MB)
Version assembly_curated from 28 July 2020
bPluApr1.alt.cur.20200728.fasta.gz (320 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 12 | 6.54 Mbp | 12 | 6.54 Mbp |
| 20 | 29 | 5.08 Mbp | 29 | 5.08 Mbp |
| 30 | 51 | 3.79 Mbp | 51 | 3.79 Mbp |
| 40 | 80 | 3.09 Mbp | 80 | 3.09 Mbp |
| 50 | 116 | 2.55 Mbp | 116 | 2.55 Mbp |
| 60 | 159 | 2.09 Mbp | 159 | 2.09 Mbp |
| 70 | 212 | 1.71 Mbp | 212 | 1.71 Mbp |
| 80 | 282 | 1.21 Mbp | 282 | 1.21 Mbp |
| 90 | 378 | 0.85 Mbp | 378 | 0.85 Mbp |
| 100 | 540 | 0.44 Mbp | 540 | 0.44 Mbp |
| 1.086x | 1152 | 1.09 Gbp | 1147 | 1.09 Gbp |
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 5 December 2019
bPluApr1.MT.20191205.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 5 December 2019
bPluApr1.MT.20191205.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.