Pluvialis apricaria

European golden plover


Information

Resource
NCBI Taxonomy Browser NCBI:txid670352

No image

Raw Data

Datatype Approximate Coverage Download Size
10x98.86x50.342 GB
Arima88.94x48.604 GB
Bionano473.49x0.804 GB
PacBio SubReads98.23x175.523 GB
Coverage based on genome size 1.00 Gbp.
Last upload on 4 March 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Pluvialis_apricaria/bPluApr1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pluvialis_apricaria/bPluApr1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pluvialis_apricaria/bPluApr1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pluvialis_apricaria/bPluApr1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 28 July 2020
bPluApr1.pri.cur.20200728.fasta.gz (363 MB)

Contigs Scaffolds
NG LG Len LG Len
10 1 53.74 Mbp 0 222.69 Mbp
20 3 33.19 Mbp 0 222.69 Mbp
30 7 26.50 Mbp 1 170.65 Mbp
40 11 23.37 Mbp 2 130.37 Mbp
50 16 19.96 Mbp 2 130.37 Mbp
60 21 16.73 Mbp 3 87.94 Mbp
70 28 13.66 Mbp 5 82.58 Mbp
80 35 11.85 Mbp 6 73.76 Mbp
90 46 7.26 Mbp 8 32.00 Mbp
100 62 5.29 Mbp 11 25.54 Mbp
1.235x 374 1.24 Gbp 106 1.25 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 28 July 2020
bPluApr1.alt.cur.20200728.fasta.gz (320 MB)

Contigs Scaffolds
NG LG Len LG Len
10 12 6.54 Mbp 12 6.54 Mbp
20 29 5.08 Mbp 29 5.08 Mbp
30 51 3.79 Mbp 51 3.79 Mbp
40 80 3.09 Mbp 80 3.09 Mbp
50 116 2.55 Mbp 116 2.55 Mbp
60 159 2.09 Mbp 159 2.09 Mbp
70 212 1.71 Mbp 212 1.71 Mbp
80 282 1.21 Mbp 282 1.21 Mbp
90 378 0.85 Mbp 378 0.85 Mbp
100 540 0.44 Mbp 540 0.44 Mbp
1.086x 1152 1.09 Gbp 1147 1.09 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 5 December 2019
bPluApr1.MT.20191205.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.