Pogoniulus pusillus
Red-fronted tinkerbird
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid488313 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_015220805.1 | GCA_015220175.1 |
| ENA | GCA_015220805.1 | GCA_015220175.1 |
| UCSC Genome Browser | GCA_015220805.1 | GCA_015220175.1 |
CC BY-SA 4.0 Alan Manson (Wikimedia)
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 107.83 Gbp | 107.83x | 54.502 GB |
| Arima | 81.05 Gbp | 81.05x | 43.965 GB |
| Bionano | 597.46 Gbp | 597.46x | 1.110 GB |
| PacBio SubReads | 165.44 Gbp | 165.44x | 292.750 GB |
Coverage based on genome size 1.00 Gbp.
Last upload on 23 January 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Pogoniulus_pusillus/bPogPus1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pogoniulus_pusillus/bPogPus1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pogoniulus_pusillus/bPogPus1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pogoniulus_pusillus/bPogPus1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Pogoniulus_pusillus/bPogPus1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pogoniulus_pusillus/bPogPus1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pogoniulus_pusillus/bPogPus1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 14 May 2020
bPogPus1.pri.cur.20200514.fasta.gz (359 MB)
Version assembly_curated from 14 May 2020
bPogPus1.pri.cur.20200514.fasta.gz (359 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 2 | 40.39 Mbp | 0 | 117.91 Mbp |
| 20 | 5 | 30.97 Mbp | 2 | 50.46 Mbp |
| 30 | 8 | 28.01 Mbp | 4 | 49.02 Mbp |
| 40 | 12 | 21.81 Mbp | 6 | 48.03 Mbp |
| 50 | 17 | 20.64 Mbp | 8 | 41.51 Mbp |
| 60 | 22 | 18.25 Mbp | 11 | 34.65 Mbp |
| 70 | 28 | 15.34 Mbp | 14 | 32.53 Mbp |
| 80 | 35 | 11.60 Mbp | 18 | 25.07 Mbp |
| 90 | 45 | 9.21 Mbp | 22 | 23.07 Mbp |
| 100 | 58 | 6.30 Mbp | 26 | 20.83 Mbp |
| 1.266x | 559 | 1.27 Gbp | 252 | 1.27 Gbp |
NG based on genome size 1.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 14 May 2020
bPogPus1.alt.cur.20200514.fasta.gz (315 MB)
Version assembly_curated from 14 May 2020
bPogPus1.alt.cur.20200514.fasta.gz (315 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 39 | 1.96 Mbp | 39 | 1.96 Mbp |
| 20 | 100 | 1.41 Mbp | 100 | 1.41 Mbp |
| 30 | 181 | 1.10 Mbp | 181 | 1.10 Mbp |
| 40 | 283 | 0.87 Mbp | 283 | 0.87 Mbp |
| 50 | 411 | 0.71 Mbp | 411 | 0.71 Mbp |
| 60 | 565 | 0.59 Mbp | 565 | 0.59 Mbp |
| 70 | 751 | 0.49 Mbp | 751 | 0.49 Mbp |
| 80 | 979 | 0.40 Mbp | 979 | 0.40 Mbp |
| 90 | 1270 | 0.30 Mbp | 1269 | 0.30 Mbp |
| 100 | 1683 | 0.19 Mbp | 1682 | 0.19 Mbp |
| 1.102x | 2760 | 1.10 Gbp | 2748 | 1.10 Gbp |
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 24 January 2020
bPogPus1.MT.20200124.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 24 January 2020
bPogPus1.MT.20200124.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.