Pogoniulus pusillus

Red-fronted tinkerbird


Information

Resource
NCBI Taxonomy Browser NCBI:txid488313

No image

Raw Data

Datatype Approximate Coverage Download Size
10x107.83x54.502 GB
Arima81.05x43.965 GB
Bionano597.46x1.110 GB
PacBio SubReads165.44x292.750 GB
Coverage based on genome size 1.00 Gbp.
Last upload on 23 January 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Pogoniulus_pusillus/bPogPus1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pogoniulus_pusillus/bPogPus1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pogoniulus_pusillus/bPogPus1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pogoniulus_pusillus/bPogPus1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 14 May 2020
bPogPus1.pri.cur.20200514.fasta.gz (359 MB)

Contigs Scaffolds
NG LG Len LG Len
10 2 40.39 Mbp 0 117.91 Mbp
20 5 30.97 Mbp 2 50.46 Mbp
30 8 28.01 Mbp 4 49.02 Mbp
40 12 21.81 Mbp 6 48.03 Mbp
50 17 20.64 Mbp 8 41.51 Mbp
60 22 18.25 Mbp 11 34.65 Mbp
70 28 15.34 Mbp 14 32.53 Mbp
80 35 11.60 Mbp 18 25.07 Mbp
90 45 9.21 Mbp 22 23.07 Mbp
100 58 6.30 Mbp 26 20.83 Mbp
1.266x 559 1.27 Gbp 252 1.27 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 14 May 2020
bPogPus1.alt.cur.20200514.fasta.gz (315 MB)

Contigs Scaffolds
NG LG Len LG Len
10 39 1.96 Mbp 39 1.96 Mbp
20 100 1.41 Mbp 100 1.41 Mbp
30 181 1.10 Mbp 181 1.10 Mbp
40 283 0.87 Mbp 283 0.87 Mbp
50 411 0.71 Mbp 411 0.71 Mbp
60 565 0.59 Mbp 565 0.59 Mbp
70 751 0.49 Mbp 751 0.49 Mbp
80 979 0.40 Mbp 979 0.40 Mbp
90 1270 0.30 Mbp 1269 0.30 Mbp
100 1683 0.19 Mbp 1682 0.19 Mbp
1.102x 2760 1.10 Gbp 2748 1.10 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 24 January 2020
bPogPus1.MT.20200124.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.