Pristis pectinata
smalltooth sawfish
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid685728 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_009764475.2 | GCA_009764485.1 |
| ENA | GCA_009764475.2 | GCA_009764485.1 |
| UCSC Genome Browser | GCA_009764475.2 | GCA_009764485.1 |
CC BY-NC-ND 2.0 myfwc (flickr)
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 181.83 Gbp | 64.94x | 94.045 GB |
| Arima | 211.06 Gbp | 75.38x | 109.807 GB |
| Bionano | 654.86 Gbp | 233.88x | 1.136 GB |
| PacBio SubReads | 173.35 Gbp | 61.91x | 296.938 GB |
Coverage based on genome size 2.80 Gbp.
Last upload on 21 August 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Pristis_pectinata/sPriPec2/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pristis_pectinata/sPriPec2/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pristis_pectinata/sPriPec2/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pristis_pectinata/sPriPec2/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Pristis_pectinata/sPriPec2/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pristis_pectinata/sPriPec2/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pristis_pectinata/sPriPec2/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 15 December 2020
sPriPec2.pri.cur.20201215.fasta.gz (659 MB)
Version assembly_curated from 15 December 2020
sPriPec2.pri.cur.20201215.fasta.gz (659 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 5 | 38.51 Mbp | 1 | 145.56 Mbp |
| 20 | 13 | 32.68 Mbp | 3 | 120.47 Mbp |
| 30 | 23 | 22.28 Mbp | 6 | 104.35 Mbp |
| 40 | 38 | 17.01 Mbp | 9 | 101.70 Mbp |
| 50 | 58 | 11.07 Mbp | 12 | 53.95 Mbp |
| 60 | 87 | 8.14 Mbp | 18 | 44.17 Mbp |
| 70 | 143 | 3.00 Mbp | 26 | 31.93 Mbp |
| 80 | 640 | 68.70 Kbp | 40 | 5.27 Mbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.803x | 870 | 2.25 Gbp | 172 | 2.27 Gbp |
NG based on genome size 2.80 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 15 December 2020
sPriPec2.alt.cur.20201215.fasta.gz (497 MB)
Version assembly_curated from 15 December 2020
sPriPec2.alt.cur.20201215.fasta.gz (497 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 373 | 0.56 Mbp | 373 | 0.56 Mbp |
| 20 | 992 | 0.38 Mbp | 992 | 0.38 Mbp |
| 30 | 1885 | 0.26 Mbp | 1885 | 0.26 Mbp |
| 40 | 3186 | 0.18 Mbp | 3186 | 0.18 Mbp |
| 50 | 5297 | 98.93 Kbp | 5297 | 98.93 Kbp |
| 60 | 10191 | 27.57 Kbp | 10191 | 27.57 Kbp |
| 70 | - | - | - | - |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.605x | 10892 | 1.69 Gbp | 10892 | 1.69 Gbp |
NG based on genome size 2.80 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_rockefeller from 21 August 2019
sPriPec2.MT.20190821.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 21 August 2019
sPriPec2.MT.20190821.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.