Pygocentrus nattereri

red-bellied piranha


Information

Resource
NCBI Taxonomy Browser NCBI:txid42514

No image

Raw Data

Datatype Approximate Coverage Download Size
10x73.15x41.015 GB
Arima84.21x55.372 GB
Bionano700.00x1.082 GB
PacBio SubReads77.77x160.160 GB
Coverage based on genome size 1.20 Gbp.
Last upload on 10 October 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Pygocentrus_nattereri/fPygNat1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pygocentrus_nattereri/fPygNat1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pygocentrus_nattereri/fPygNat1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pygocentrus_nattereri/fPygNat1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 13 March 2020
fPygNat1.pri.cur.20200313.fasta.gz (343 MB)

Contigs Scaffolds
NG LG Len LG Len
10 3 30.23 Mbp 2 51.77 Mbp
20 8 22.97 Mbp 4 51.32 Mbp
30 13 20.19 Mbp 6 47.61 Mbp
40 20 16.90 Mbp 9 44.86 Mbp
50 27 13.18 Mbp 12 42.28 Mbp
60 38 10.39 Mbp 15 41.50 Mbp
70 52 7.57 Mbp 18 39.90 Mbp
80 70 5.67 Mbp 21 34.86 Mbp
90 98 3.14 Mbp 24 34.22 Mbp
100 216 0.25 Mbp 28 21.58 Mbp
1.010x 358 1.21 Gbp 55 1.22 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 13 March 2020
fPygNat1.alt.cur.20200313.fasta.gz (84 MB)

Contigs Scaffolds
NG LG Len LG Len
10 209 0.36 Mbp 209 0.36 Mbp
20 849 0.10 Mbp 849 0.10 Mbp
30 - - - -
40 - - - -
50 - - - -
60 - - - -
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.241x 1751 289.31 Mbp 1751 289.31 Mbp
NG based on genome size 1.20 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 7 October 2019
fPygNat1.MT.20191007.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.