Pygocentrus nattereri
red-bellied piranha
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid42514 |
No image
Raw Data
Datatype | Approximate Coverage | Download Size |
---|---|---|
10x | 73.15x | 41.015 GB |
Arima | 84.21x | 55.372 GB |
Bionano | 700.00x | 1.082 GB |
PacBio SubReads | 77.77x | 160.160 GB |
Coverage based on genome size 1.20 Gbp.
Last upload on 10 October 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Pygocentrus_nattereri/fPygNat1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pygocentrus_nattereri/fPygNat1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pygocentrus_nattereri/fPygNat1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pygocentrus_nattereri/fPygNat1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Pygocentrus_nattereri/fPygNat1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pygocentrus_nattereri/fPygNat1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pygocentrus_nattereri/fPygNat1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 13 March 2020
fPygNat1.pri.cur.20200313.fasta.gz (343 MB)
Version assembly_curated from 13 March 2020
fPygNat1.pri.cur.20200313.fasta.gz (343 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 30.23 Mbp | 2 | 51.77 Mbp |
20 | 8 | 22.97 Mbp | 4 | 51.32 Mbp |
30 | 13 | 20.19 Mbp | 6 | 47.61 Mbp |
40 | 20 | 16.90 Mbp | 9 | 44.86 Mbp |
50 | 27 | 13.18 Mbp | 12 | 42.28 Mbp |
60 | 38 | 10.39 Mbp | 15 | 41.50 Mbp |
70 | 52 | 7.57 Mbp | 18 | 39.90 Mbp |
80 | 70 | 5.67 Mbp | 21 | 34.86 Mbp |
90 | 98 | 3.14 Mbp | 24 | 34.22 Mbp |
100 | 216 | 0.25 Mbp | 28 | 21.58 Mbp |
1.010x | 358 | 1.21 Gbp | 55 | 1.22 Gbp |
Individual 1 Alternate Assembly
Version assembly_curated from 13 March 2020
fPygNat1.alt.cur.20200313.fasta.gz (84 MB)
Version assembly_curated from 13 March 2020
fPygNat1.alt.cur.20200313.fasta.gz (84 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 209 | 0.36 Mbp | 209 | 0.36 Mbp |
20 | 849 | 0.10 Mbp | 849 | 0.10 Mbp |
30 | - | - | - | - |
40 | - | - | - | - |
50 | - | - | - | - |
60 | - | - | - | - |
70 | - | - | - | - |
80 | - | - | - | - |
90 | - | - | - | - |
100 | - | - | - | - |
0.241x | 1751 | 289.31 Mbp | 1751 | 289.31 Mbp |
NG based on genome size 1.20 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 7 October 2019
fPygNat1.MT.20191007.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 7 October 2019
fPygNat1.MT.20191007.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.