Pygocentrus nattereri
red-bellied piranha
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid42514 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_015220715.1 | GCA_015220065.1 |
| ENA | GCA_015220715.1 | GCA_015220065.1 |
| UCSC Genome Browser | GCA_015220715.1 | GCA_015220065.1 |
CC BY-SA 3.0 Grook da Oger (Wikimedia)
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 87.78 Gbp | 73.15x | 41.015 GB |
| Arima | 101.05 Gbp | 84.21x | 55.372 GB |
| Bionano | 840.00 Gbp | 700.00x | 1.082 GB |
| PacBio SubReads | 93.33 Gbp | 77.77x | 160.160 GB |
Coverage based on genome size 1.20 Gbp.
Last upload on 10 October 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Pygocentrus_nattereri/fPygNat1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pygocentrus_nattereri/fPygNat1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pygocentrus_nattereri/fPygNat1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pygocentrus_nattereri/fPygNat1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Pygocentrus_nattereri/fPygNat1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pygocentrus_nattereri/fPygNat1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Pygocentrus_nattereri/fPygNat1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 13 March 2020
fPygNat1.pri.cur.20200313.fasta.gz (343 MB)
Version assembly_curated from 13 March 2020
fPygNat1.pri.cur.20200313.fasta.gz (343 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 3 | 30.23 Mbp | 2 | 51.77 Mbp |
| 20 | 8 | 22.97 Mbp | 4 | 51.32 Mbp |
| 30 | 13 | 20.19 Mbp | 6 | 47.61 Mbp |
| 40 | 20 | 16.90 Mbp | 9 | 44.86 Mbp |
| 50 | 27 | 13.18 Mbp | 12 | 42.28 Mbp |
| 60 | 38 | 10.39 Mbp | 15 | 41.50 Mbp |
| 70 | 52 | 7.57 Mbp | 18 | 39.90 Mbp |
| 80 | 70 | 5.67 Mbp | 21 | 34.86 Mbp |
| 90 | 98 | 3.14 Mbp | 24 | 34.22 Mbp |
| 100 | 216 | 0.25 Mbp | 28 | 21.58 Mbp |
| 1.010x | 358 | 1.21 Gbp | 55 | 1.22 Gbp |
NG based on genome size 1.20 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 13 March 2020
fPygNat1.alt.cur.20200313.fasta.gz (84 MB)
Version assembly_curated from 13 March 2020
fPygNat1.alt.cur.20200313.fasta.gz (84 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 209 | 0.36 Mbp | 209 | 0.36 Mbp |
| 20 | 849 | 0.10 Mbp | 849 | 0.10 Mbp |
| 30 | - | - | - | - |
| 40 | - | - | - | - |
| 50 | - | - | - | - |
| 60 | - | - | - | - |
| 70 | - | - | - | - |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.241x | 1751 | 289.31 Mbp | 1751 | 289.31 Mbp |
NG based on genome size 1.20 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 7 October 2019
fPygNat1.MT.20191007.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 7 October 2019
fPygNat1.MT.20191007.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.