Rattus norvegicus

Norway rat


Information

Resource
NCBI Taxonomy Browser NCBI:txid10116

CC BY-SA 2.0, Jean-Jacques Boujot (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10xN/A130.223 GB
ArimaN/A155.028 GB
BionanoN/A1.419 GB
PacBio SubReadsN/A470.087 GB
No genome size estimate available.
Last upload on 2 February 2020.
Download each datatype using the AWS Command Line Interface:

Assemblies

Individual 1 Primary Assembly
Version assembly_cambridge from 3 March 2020
mRatNor1.pri.asm.20200303.fasta.gz (761 MB)

Contigs Scaffolds
NG LG Len LG Len
10 2 85.77 Mbp 1 248.22 Mbp
20 5 73.57 Mbp 2 182.55 Mbp
30 9 65.55 Mbp 3 166.11 Mbp
40 14 46.54 Mbp 5 152.89 Mbp
50 20 33.91 Mbp 7 134.96 Mbp
60 29 26.51 Mbp 9 114.25 Mbp
70 41 18.55 Mbp 11 107.09 Mbp
80 62 9.87 Mbp 14 86.28 Mbp
90 101 4.21 Mbp 19 42.06 Mbp
100 737 136 bp 218 746 bp
1.000x 738 2.63 Gbp 219 2.68 Gbp
Individual 1 Alternate Assembly
Version assembly_cambridge from 3 March 2020
mRatNor1.alt.asm.20200303.fasta.gz (83 MB)

Contigs Scaffolds
NG LG Len LG Len
10 138 0.15 Mbp 138 0.15 Mbp
20 343 0.13 Mbp 343 0.13 Mbp
30 577 0.12 Mbp 576 0.12 Mbp
40 831 0.11 Mbp 830 0.11 Mbp
50 1104 0.10 Mbp 1104 0.10 Mbp
60 1397 93.83 Kbp 1396 93.86 Kbp
70 1711 86.88 Kbp 1711 86.88 Kbp
80 2056 77.48 Kbp 2055 77.49 Kbp
90 2453 64.76 Kbp 2452 64.78 Kbp
100 3104 1.52 Kbp 3103 1.52 Kbp
1.000x 3105 284.12 Mbp 3104 284.12 Mbp
NG based on each assembly size.
(No genome size estimate available.)
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 December 2019
mRatNor1.MT.20191204.fasta.gz (5 KB)

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