Rhinatrema bivittatum

two-lined caecilian


Information

NCBI Taxonomy Browser
Primary assembly in GenBank or ENA
Alternate assembly in GenBank or ENA
Copyright Stuart V Nielsen, used with permission

Raw Data

Datatype Approximate Coverage Download Size
10x72.45x250.442 GB
Arima74.09x222.490 GB
Bionano359.44x1.550 GB
PacBio ScrapsN/A1225.510 GB
PacBio SubReads45.79x415.928 GB
Coverage based on genome size 5.07 Gbp.
Last upload on 1 May 2018.
Download each datatype using the AWS Command Line Interface:

Assemblies


Primary assembly in GenBank or ENA
Alternate assembly in GenBank or ENA

Individual 1 Primary Assembly
Version assembly_curated from 9 April 2019
aRhiBiv1.pri.cur.20190409.fasta.gz (2 GB)

Contigs Scaffolds
NG LG Len LG Len
10 48 8.64 Mbp 0 0.84 Gbp
20 117 6.48 Mbp 1 0.83 Gbp
30 206 5.07 Mbp 1 0.83 Gbp
40 318 4.08 Mbp 2 0.60 Gbp
50 455 3.35 Mbp 3 486.88 Mbp
60 623 2.70 Mbp 4 387.03 Mbp
70 838 2.05 Mbp 6 313.51 Mbp
80 1128 1.49 Mbp 7 277.53 Mbp
90 1560 0.89 Mbp 10 103.41 Mbp
100 2556 0.25 Mbp 16 63.94 Mbp
1.043x 4902 5.29 Gbp 1329 5.32 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 9 April 2019
aRhiBiv1.alt.cur.20190409.fasta.gz (1 GB)

Contigs Scaffolds
NG LG Len LG Len
10 545 0.72 Mbp 545 0.72 Mbp
20 1391 0.51 Mbp 1391 0.51 Mbp
30 2523 0.39 Mbp 2523 0.39 Mbp
40 4006 0.30 Mbp 4006 0.30 Mbp
50 5940 0.23 Mbp 5940 0.23 Mbp
60 8452 0.18 Mbp 8452 0.18 Mbp
70 11779 0.13 Mbp 11779 0.13 Mbp
80 16417 89.74 Kbp 16417 89.74 Kbp
90 24732 32.97 Kbp 24732 32.97 Kbp
100 - - - -
0.911x 27233 4.62 Gbp 27231 4.62 Gbp
NG based on genome size 5.07 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_mt_milan from 10 March 2019
aRhiBiv1.MT.20190310.fasta.gz (5 KB)

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