Rhinolophus ferrumequinum

greater horseshoe bat


Information

NCBI Taxonomy Browser
Primary assembly in GenBank or ENA
Alternate assembly in GenBank or ENA
CC BY-NC-SA 2.0 Ján Svetlík (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10x45.26x64.099 GB
Bionano672.14x2.220 GB
PacBio ScrapsN/A454.551 GB
PacBio SubReads64.34x271.143 GB
Phase Genomics19.06x28.046 GB
Coverage based on genome size 2.37 Gbp.
Last upload on 3 April 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/phase/ .

Assemblies

Primary assembly in GenBank or ENA
Alternate assembly in GenBank or ENA
Individual 1 Primary Assembly
Version assembly_curated from 7 September 2018
mRhiFer1.pri.cur.20180907.fasta.gz (607 MB)

Contigs Scaffolds
NG LG Len LG Len
10 3 59.75 Mbp 2 106.21 Mbp
20 7 51.12 Mbp 4 101.15 Mbp
30 12 40.32 Mbp 6 97.57 Mbp
40 19 32.48 Mbp 9 89.12 Mbp
50 27 25.18 Mbp 11 83.96 Mbp
60 39 16.72 Mbp 15 66.94 Mbp
70 56 10.68 Mbp 19 55.57 Mbp
80 85 5.27 Mbp 23 44.82 Mbp
90 - - - -
100 - - - -
0.873x 292 2.07 Gbp 134 2.08 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 7 September 2018
mRhiFer1.alt.cur.20180907.fasta.gz (453 MB)

Contigs Scaffolds
NG LG Len LG Len
10 242 0.71 Mbp 242 0.71 Mbp
20 648 0.48 Mbp 648 0.48 Mbp
30 1250 0.33 Mbp 1250 0.33 Mbp
40 2162 0.20 Mbp 2162 0.20 Mbp
50 3838 90.10 Kbp 3838 90.18 Kbp
60 9121 29.05 Kbp 9119 29.05 Kbp
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.639x 13426 1.51 Gbp 13424 1.51 Gbp
NG based on genome size 2.37 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_mt_milan from 8 March 2019
mRhiFer1.MT.20190308.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.