Rhinolophus ferrumequinum
greater horseshoe bat
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid59479 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_014108255.1 | |
| ENA | GCA_014108255.1 | |
| UCSC Genome Browser | GCA_014108255.1 |
CC BY-NC-SA 2.0 Ján Svetlík (flickr)
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 107.25 Gbp | 45.26x | 64.099 GB |
| Bionano | 1592.93 Gbp | 672.14x | 2.220 GB |
| PacBio SubReads | 152.47 Gbp | 64.34x | 271.143 GB |
| Phase Genomics | 45.16 Gbp | 19.06x | 28.046 GB |
Coverage based on genome size 2.37 Gbp.
Last upload on 3 April 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/phase/ .
aws s3 --no-sign-request sync s3://genomeark/species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Rhinolophus_ferrumequinum/mRhiFer1/genomic_data/phase/ .
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 7 September 2018
mRhiFer1.pri.cur.20180907.fasta.gz (607 MB)
Version assembly_curated from 7 September 2018
mRhiFer1.pri.cur.20180907.fasta.gz (607 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 3 | 59.75 Mbp | 2 | 106.21 Mbp |
| 20 | 7 | 51.12 Mbp | 4 | 101.15 Mbp |
| 30 | 12 | 40.32 Mbp | 6 | 97.57 Mbp |
| 40 | 19 | 32.48 Mbp | 9 | 89.12 Mbp |
| 50 | 27 | 25.18 Mbp | 11 | 83.96 Mbp |
| 60 | 39 | 16.72 Mbp | 15 | 66.94 Mbp |
| 70 | 56 | 10.68 Mbp | 19 | 55.57 Mbp |
| 80 | 85 | 5.27 Mbp | 23 | 44.82 Mbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.873x | 292 | 2.07 Gbp | 134 | 2.08 Gbp |
NG based on genome size 2.37 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 7 September 2018
mRhiFer1.alt.cur.20180907.fasta.gz (453 MB)
Version assembly_curated from 7 September 2018
mRhiFer1.alt.cur.20180907.fasta.gz (453 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 242 | 0.71 Mbp | 242 | 0.71 Mbp |
| 20 | 648 | 0.48 Mbp | 648 | 0.48 Mbp |
| 30 | 1250 | 0.33 Mbp | 1250 | 0.33 Mbp |
| 40 | 2162 | 0.20 Mbp | 2162 | 0.20 Mbp |
| 50 | 3838 | 90.10 Kbp | 3838 | 90.18 Kbp |
| 60 | 9121 | 29.05 Kbp | 9119 | 29.05 Kbp |
| 70 | - | - | - | - |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.639x | 13426 | 1.51 Gbp | 13424 | 1.51 Gbp |
NG based on genome size 2.37 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
mRhiFer1.MT.20191003.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 3 October 2019
mRhiFer1.MT.20191003.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.