Rousettus aegyptiacus
Egyptian fruit bat
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid9407 |
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | GCA_014176215.1 | |
ENA | GCA_014176215.1 | |
UCSC Genome Browser | GCA_014176215.1 |
CC BY-SA 3.0 Вых Пыхманн (wikimedia)
Raw Data
Datatype | Approximate Size | Download Size | |
---|---|---|---|
Bases | Coverage | ||
10x | 112.49 Gbp | 53.31x | 56.105 GB |
Arima | 22.85 Gbp | 10.83x | 14.790 GB |
Bionano | 1531.71 Gbp | 725.93x | 1.033 GB |
PacBio SubReads | 122.36 Gbp | 57.99x | 217.105 GB |
Coverage based on genome size 2.11 Gbp.
Last upload on 23 February 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Rousettus_aegyptiacus/mRouAeg1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_dresden_DAmar1.0 from 27 April 2019
mRouAeg1.pri.asm.20190427.fasta.gz (599 MB)
Version assembly_dresden_DAmar1.0 from 27 April 2019
mRouAeg1.pri.asm.20190427.fasta.gz (599 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 59.73 Mbp | 1 | 177.60 Mbp |
20 | 7 | 41.71 Mbp | 2 | 173.79 Mbp |
30 | 12 | 31.55 Mbp | 3 | 160.59 Mbp |
40 | 20 | 24.21 Mbp | 5 | 115.50 Mbp |
50 | 30 | 18.63 Mbp | 7 | 112.74 Mbp |
60 | 43 | 13.65 Mbp | 8 | 106.50 Mbp |
70 | 63 | 8.03 Mbp | 11 | 94.23 Mbp |
80 | 100 | 4.03 Mbp | 13 | 61.85 Mbp |
90 | - | - | - | - |
100 | - | - | - | - |
0.885x | 271 | 1.87 Gbp | 29 | 1.89 Gbp |
NG based on genome size 2.11 Gbp.
Individual 1 Alternate Assembly
No alternate assembly available.
No alternate assembly available.
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.