Salmo trutta

brown trout


Information

Resource
NCBI Taxonomy Browser NCBI:txid8032

Resource Primary Assembly Alternate Assembly
GenBank GCA_901001165.2
ENA GCA_901001165.2
UCSC Genome Browser GCA_901001165.2

public domain

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x212.90 Gbp89.76x142.574 GB
Arima144.52 Gbp60.93x71.159 GB
Bionano494.43 Gbp208.46x0.592 GB
PacBio SubReads163.01 Gbp68.73x286.601 GB
PacBio HiFi32.15 Gbp13.55x21.885 GB
Coverage based on genome size 2.37 Gbp.
Last upload on 26 April 2019.
Download each datatype using the AWS Command Line Interface:

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 3 April 2019
fSalTru1.pri.cur.20190403.fasta.gz (624 MB)

Contigs Scaffolds
NG LG Len LG Len
10 22 7.53 Mbp 2 86.25 Mbp
20 59 5.36 Mbp 5 74.75 Mbp
30 112 3.65 Mbp 8 66.90 Mbp
40 186 2.66 Mbp 12 59.76 Mbp
50 294 1.69 Mbp 17 52.21 Mbp
60 464 1.07 Mbp 21 49.36 Mbp
70 740 0.65 Mbp 26 46.38 Mbp
80 1197 0.38 Mbp 31 44.89 Mbp
90 2068 0.18 Mbp 38 25.48 Mbp
100 5380 1 bp 1439 6.00 Kbp
1.000x 5381 2.30 Gbp 1440 2.37 Gbp
NG based on genome size 2.37 Gbp.
Individual 1 Alternate Assembly
Version assembly_cambridge from 16 October 2018
fSalTru1.alt.asm.20181016.fasta.gz (55 MB)

Contigs Scaffolds
NG LG Len LG Len
10 184 82.68 Kbp 184 82.68 Kbp
20 434 70.31 Kbp 434 70.31 Kbp
30 720 63.17 Kbp 720 63.17 Kbp
40 1035 57.51 Kbp 1035 57.51 Kbp
50 1379 53.13 Kbp 1379 53.13 Kbp
60 1751 48.87 Kbp 1751 48.87 Kbp
70 2161 43.87 Kbp 2161 43.87 Kbp
80 2624 37.88 Kbp 2624 37.88 Kbp
90 3183 29.83 Kbp 3183 29.83 Kbp
100 4193 164 bp 4193 164 bp
1.000x 4194 189.98 Mbp 4194 189.98 Mbp
NG based on genome size 2.37 Gbp.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
fSalTru1.MT.20191003.fasta.gz (5 KB)

Data Use Policy

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