Sciurus vulgaris

Eurasian red squirrel


Information

Resource
NCBI Taxonomy Browser NCBI:txid55149

Resource Primary Assembly Alternate Assembly
GenBank GCA_902686455.2 GCA_902685485.1
ENA GCA_902686455.2 GCA_902685485.1
UCSC Genome Browser GCA_902686455.2 GCA_902685485.1

CC BY-SA 3.0 RedR (wikimedia)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x222.50 Gbp77.29x148.542 GB
Bionano529.81 Gbp184.05x0.977 GB
PacBio SubReads206.77 Gbp71.83x363.403 GB
Coverage based on genome size 2.88 Gbp.
Last upload on 4 June 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Sciurus_vulgaris/mSciVul1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sciurus_vulgaris/mSciVul1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sciurus_vulgaris/mSciVul1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 27 October 2019
mSciVul1.pri.cur.20191027.fasta.gz (791 MB)

Contigs Scaffolds
NG LG Len LG Len
10 5 39.64 Mbp 1 204.37 Mbp
20 13 31.67 Mbp 2 189.66 Mbp
30 23 24.28 Mbp 4 181.67 Mbp
40 35 20.26 Mbp 6 162.82 Mbp
50 50 16.33 Mbp 7 153.87 Mbp
60 68 13.09 Mbp 9 145.29 Mbp
70 93 8.73 Mbp 11 132.26 Mbp
80 134 4.83 Mbp 14 99.24 Mbp
90 233 1.55 Mbp 18 41.58 Mbp
100 1814 1 bp 637 659 bp
1.000x 1815 2.72 Gbp 638 2.88 Gbp
NG based on genome size 2.88 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 27 October 2019
mSciVul1.alt.cur.20191027.fasta.gz (398 MB)

Contigs Scaffolds
NG LG Len LG Len
10 192 0.54 Mbp 192 0.54 Mbp
20 494 0.39 Mbp 494 0.39 Mbp
30 892 0.31 Mbp 892 0.31 Mbp
40 1399 0.24 Mbp 1399 0.24 Mbp
50 2032 0.19 Mbp 2032 0.19 Mbp
60 2828 0.15 Mbp 2827 0.15 Mbp
70 3854 0.12 Mbp 3853 0.12 Mbp
80 5208 85.99 Kbp 5206 86.00 Kbp
90 7126 58.84 Kbp 7124 58.84 Kbp
100 10656 101 bp 10654 101 bp
1.000x 10657 1.37 Gbp 10655 1.37 Gbp
NG based on genome size 2.88 Gbp.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
mSciVul1.MT.20191003.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.