Sciurus vulgaris
Eurasian red squirrel
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid55149 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_902685485.1 | |
| ENA | GCA_902685485.1 | |
| UCSC Genome Browser | GCA_902685485.1 |
CC BY-SA 3.0 RedR (wikimedia)
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 222.50 Gbp | 77.29x | 148.542 GB |
| Bionano | 529.81 Gbp | 184.05x | 0.977 GB |
| PacBio SubReads | 206.77 Gbp | 71.83x | 363.403 GB |
Coverage based on genome size 2.88 Gbp.
Last upload on 4 June 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Sciurus_vulgaris/mSciVul1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sciurus_vulgaris/mSciVul1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sciurus_vulgaris/mSciVul1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Sciurus_vulgaris/mSciVul1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sciurus_vulgaris/mSciVul1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 27 October 2019
mSciVul1.pri.cur.20191027.fasta.gz (791 MB)
Version assembly_curated from 27 October 2019
mSciVul1.pri.cur.20191027.fasta.gz (791 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 5 | 39.64 Mbp | 1 | 204.37 Mbp |
| 20 | 13 | 31.67 Mbp | 2 | 189.66 Mbp |
| 30 | 23 | 24.28 Mbp | 4 | 181.67 Mbp |
| 40 | 35 | 20.26 Mbp | 6 | 162.82 Mbp |
| 50 | 50 | 16.33 Mbp | 7 | 153.87 Mbp |
| 60 | 68 | 13.09 Mbp | 9 | 145.29 Mbp |
| 70 | 93 | 8.73 Mbp | 11 | 132.26 Mbp |
| 80 | 134 | 4.83 Mbp | 14 | 99.24 Mbp |
| 90 | 233 | 1.55 Mbp | 18 | 41.58 Mbp |
| 100 | 1814 | 1 bp | 637 | 659 bp |
| 1.000x | 1815 | 2.72 Gbp | 638 | 2.88 Gbp |
Individual 1 Alternate Assembly
Version assembly_curated from 27 October 2019
mSciVul1.alt.cur.20191027.fasta.gz (398 MB)
Version assembly_curated from 27 October 2019
mSciVul1.alt.cur.20191027.fasta.gz (398 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 192 | 0.54 Mbp | 192 | 0.54 Mbp |
| 20 | 494 | 0.39 Mbp | 494 | 0.39 Mbp |
| 30 | 892 | 0.31 Mbp | 892 | 0.31 Mbp |
| 40 | 1399 | 0.24 Mbp | 1399 | 0.24 Mbp |
| 50 | 2032 | 0.19 Mbp | 2032 | 0.19 Mbp |
| 60 | 2828 | 0.15 Mbp | 2827 | 0.15 Mbp |
| 70 | 3854 | 0.12 Mbp | 3853 | 0.12 Mbp |
| 80 | 5208 | 85.99 Kbp | 5206 | 86.00 Kbp |
| 90 | 7126 | 58.84 Kbp | 7124 | 58.84 Kbp |
| 100 | 10656 | 101 bp | 10654 | 101 bp |
| 1.000x | 10657 | 1.37 Gbp | 10655 | 1.37 Gbp |
NG based on genome size 2.88 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
mSciVul1.MT.20191003.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 3 October 2019
mSciVul1.MT.20191003.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.