Scleropages formosus

golden arowana


Information

Resource
NCBI Taxonomy Browser NCBI:txid113540

Resource Primary Assembly Alternate Assembly
GenBank GCA_900964775.1 GCA_900964985.2
ENA GCA_900964775.1 GCA_900964985.2
UCSC Genome Browser GCA_900964775.1 GCA_900964985.2

CC BY-SA 2.5 Okinawa Churaumi Aquarium (opencage)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x129.49 Gbp165.05x80.211 GB
Arima139.44 Gbp177.73x85.051 GB
Bionano73.29 Gbp93.42x0.119 GB
PacBio SubReads57.12 Gbp72.81x98.084 GB
Coverage based on genome size 0.78 Gbp.
Last upload on 15 January 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Scleropages_formosus/fSclFor1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Scleropages_formosus/fSclFor1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Scleropages_formosus/fSclFor1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Scleropages_formosus/fSclFor1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 1 April 2019
fSclFor1.pri.cur.20190401.fasta.gz (231 MB)

Contigs Scaffolds
NG LG Len LG Len
10 3 19.33 Mbp 1 43.58 Mbp
20 8 13.98 Mbp 3 39.06 Mbp
30 14 11.90 Mbp 5 38.29 Mbp
40 22 9.87 Mbp 7 32.82 Mbp
50 30 9.10 Mbp 10 31.08 Mbp
60 39 7.19 Mbp 12 29.67 Mbp
70 52 5.14 Mbp 15 27.32 Mbp
80 69 3.96 Mbp 18 25.98 Mbp
90 93 2.68 Mbp 21 24.52 Mbp
100 215 2.02 Kbp 70 23.59 Kbp
1.000x 216 0.78 Gbp 71 0.78 Gbp
NG based on genome size 0.78 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 1 April 2019
fSclFor1.alt.cur.20190401.fasta.gz (223 MB)

Contigs Scaffolds
NG LG Len LG Len
10 29 2.09 Mbp 29 2.09 Mbp
20 71 1.49 Mbp 71 1.49 Mbp
30 130 1.13 Mbp 130 1.13 Mbp
40 206 0.86 Mbp 206 0.86 Mbp
50 306 0.66 Mbp 306 0.66 Mbp
60 435 0.52 Mbp 435 0.52 Mbp
70 602 0.39 Mbp 602 0.39 Mbp
80 832 0.27 Mbp 832 0.27 Mbp
90 1174 0.18 Mbp 1173 0.18 Mbp
100 2006 147 bp 2005 147 bp
1.000x 2007 0.75 Gbp 2006 0.75 Gbp
NG based on genome size 0.78 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.