Scleropages formosus
golden arowana
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid113540 |
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | GCA_900964775.1 | GCA_900964985.2 |
ENA | GCA_900964775.1 | GCA_900964985.2 |
UCSC Genome Browser | GCA_900964775.1 | GCA_900964985.2 |
CC BY-SA 2.5 Okinawa Churaumi Aquarium (opencage)
Raw Data
Datatype | Approximate Size | Download Size | |
---|---|---|---|
Bases | Coverage | ||
10x | 129.49 Gbp | 165.05x | 80.211 GB |
Arima | 139.44 Gbp | 177.73x | 85.051 GB |
Bionano | 73.29 Gbp | 93.42x | 0.119 GB |
PacBio SubReads | 57.12 Gbp | 72.81x | 98.084 GB |
Coverage based on genome size 0.78 Gbp.
Last upload on 15 January 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Scleropages_formosus/fSclFor1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Scleropages_formosus/fSclFor1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Scleropages_formosus/fSclFor1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Scleropages_formosus/fSclFor1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Scleropages_formosus/fSclFor1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Scleropages_formosus/fSclFor1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Scleropages_formosus/fSclFor1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 1 April 2019
fSclFor1.pri.cur.20190401.fasta.gz (231 MB)
Version assembly_curated from 1 April 2019
fSclFor1.pri.cur.20190401.fasta.gz (231 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 19.33 Mbp | 1 | 43.58 Mbp |
20 | 8 | 13.98 Mbp | 3 | 39.06 Mbp |
30 | 14 | 11.90 Mbp | 5 | 38.29 Mbp |
40 | 22 | 9.87 Mbp | 7 | 32.82 Mbp |
50 | 30 | 9.10 Mbp | 10 | 31.08 Mbp |
60 | 39 | 7.19 Mbp | 12 | 29.67 Mbp |
70 | 52 | 5.14 Mbp | 15 | 27.32 Mbp |
80 | 69 | 3.96 Mbp | 18 | 25.98 Mbp |
90 | 93 | 2.68 Mbp | 21 | 24.52 Mbp |
100 | 215 | 2.02 Kbp | 70 | 23.59 Kbp |
1.000x | 216 | 0.78 Gbp | 71 | 0.78 Gbp |
NG based on genome size 0.78 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 1 April 2019
fSclFor1.alt.cur.20190401.fasta.gz (223 MB)
Version assembly_curated from 1 April 2019
fSclFor1.alt.cur.20190401.fasta.gz (223 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 29 | 2.09 Mbp | 29 | 2.09 Mbp |
20 | 71 | 1.49 Mbp | 71 | 1.49 Mbp |
30 | 130 | 1.13 Mbp | 130 | 1.13 Mbp |
40 | 206 | 0.86 Mbp | 206 | 0.86 Mbp |
50 | 306 | 0.66 Mbp | 306 | 0.66 Mbp |
60 | 435 | 0.52 Mbp | 435 | 0.52 Mbp |
70 | 602 | 0.39 Mbp | 602 | 0.39 Mbp |
80 | 832 | 0.27 Mbp | 832 | 0.27 Mbp |
90 | 1174 | 0.18 Mbp | 1173 | 0.18 Mbp |
100 | 2006 | 147 bp | 2005 | 147 bp |
1.000x | 2007 | 0.75 Gbp | 2006 | 0.75 Gbp |
NG based on genome size 0.78 Gbp.
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.