Sebastes umbrosus
honeycomb rockfish
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid72105 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_015220745.1 | GCA_015220095.1 |
| ENA | GCA_015220745.1 | GCA_015220095.1 |
| UCSC Genome Browser | GCA_015220745.1 | GCA_015220095.1 |
Copyright David R. Andrew, used with permission
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 53.86 Gbp | 53.86x | 26.956 GB |
| Bionano | 1114.12 Gbp | 1114.12x | 1.911 GB |
| Illumina | 41.78 Gbp | 41.78x | 18.543 GB |
| PacBio SubReads | 45.05 Gbp | 45.05x | 76.821 GB |
Coverage based on genome size 1.00 Gbp.
Last upload on 26 November 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Sebastes_umbrosus/fSebUmb1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sebastes_umbrosus/fSebUmb1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sebastes_umbrosus/fSebUmb1/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sebastes_umbrosus/fSebUmb1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Sebastes_umbrosus/fSebUmb1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sebastes_umbrosus/fSebUmb1/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sebastes_umbrosus/fSebUmb1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 7 September 2020
fSebUmb1.pri.cur.20200907.fasta.gz (229 MB)
Version assembly_curated from 7 September 2020
fSebUmb1.pri.cur.20200907.fasta.gz (229 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 4 | 20.90 Mbp | 2 | 41.17 Mbp |
| 20 | 9 | 18.80 Mbp | 4 | 38.61 Mbp |
| 30 | 15 | 15.67 Mbp | 7 | 36.01 Mbp |
| 40 | 23 | 11.45 Mbp | 10 | 34.91 Mbp |
| 50 | 33 | 8.30 Mbp | 13 | 32.63 Mbp |
| 60 | 47 | 5.85 Mbp | 16 | 30.65 Mbp |
| 70 | 69 | 3.49 Mbp | 20 | 27.31 Mbp |
| 80 | - | - | 105 | 39.23 Kbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.800x | 353 | 0.80 Gbp | 138 | 0.80 Gbp |
NG based on genome size 1.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 7 September 2020
fSebUmb1.alt.cur.20200907.fasta.gz (221 MB)
Version assembly_curated from 7 September 2020
fSebUmb1.alt.cur.20200907.fasta.gz (221 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 51 | 1.44 Mbp | 51 | 1.44 Mbp |
| 20 | 136 | 0.97 Mbp | 136 | 0.97 Mbp |
| 30 | 252 | 0.74 Mbp | 252 | 0.74 Mbp |
| 40 | 414 | 0.54 Mbp | 413 | 0.54 Mbp |
| 50 | 626 | 0.40 Mbp | 624 | 0.41 Mbp |
| 60 | 920 | 0.28 Mbp | 915 | 0.28 Mbp |
| 70 | 1392 | 0.16 Mbp | 1384 | 0.16 Mbp |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.766x | 2152 | 0.77 Gbp | 2131 | 0.77 Gbp |
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 December 2019
fSebUmb1.MT.20191203.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 3 December 2019
fSebUmb1.MT.20191203.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.