Sparus aurata

gilthead seabream


Information

Resource
NCBI Taxonomy Browser NCBI:txid8175

Resource Primary Assembly Alternate Assembly
GenBank GCA_900880695.1
ENA GCA_900880695.1
UCSC Genome Browser GCA_900880695.1

CC BY 3.0 Roberto Pillon (wikimedia)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x122.40 Gbp146.83x80.298 GB
Arima100.36 Gbp120.40x49.975 GB
PacBio SubReads47.16 Gbp56.57x84.723 GB
Coverage based on genome size 0.83 Gbp.
Last upload on 12 April 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Sparus_aurata/fSpaAur1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sparus_aurata/fSpaAur1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sparus_aurata/fSpaAur1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 14 March 2019
fSpaAur1.pri.cur.20190314.fasta.gz (225 MB)

Contigs Scaffolds
NG LG Len LG Len
10 7 9.55 Mbp 2 40.12 Mbp
20 17 7.24 Mbp 4 37.95 Mbp
30 31 5.24 Mbp 6 37.01 Mbp
40 49 4.03 Mbp 8 36.13 Mbp
50 74 2.86 Mbp 10 35.79 Mbp
60 107 2.13 Mbp 13 35.16 Mbp
70 157 1.31 Mbp 15 31.86 Mbp
80 245 0.71 Mbp 18 30.53 Mbp
90 426 0.31 Mbp 21 28.39 Mbp
100 1224 2 bp 174 20.81 Kbp
1.000x 1225 0.83 Gbp 175 0.83 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 14 March 2019
fSpaAur1.alt.cur.20190314.fasta.gz (196 MB)

Contigs Scaffolds
NG LG Len LG Len
10 91 0.51 Mbp 91 0.51 Mbp
20 257 0.34 Mbp 257 0.34 Mbp
30 486 0.25 Mbp 486 0.25 Mbp
40 791 0.19 Mbp 791 0.19 Mbp
50 1183 0.15 Mbp 1183 0.15 Mbp
60 1685 0.12 Mbp 1685 0.12 Mbp
70 2348 87.70 Kbp 2347 87.73 Kbp
80 3239 64.06 Kbp 3238 64.08 Kbp
90 4543 40.95 Kbp 4542 40.95 Kbp
100 7240 125 bp 7238 125 bp
1.000x 7241 0.67 Gbp 7239 0.67 Gbp
NG based on genome size 0.83 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
fSpaAur1.MT.20191003.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.