Sparus aurata
gilthead seabream
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid8175 |
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | GCA_900880675.2 | GCA_900880695.1 |
ENA | GCA_900880675.2 | GCA_900880695.1 |
UCSC Genome Browser | GCA_900880675.2 | GCA_900880695.1 |
CC BY 3.0 Roberto Pillon (wikimedia)
Raw Data
Datatype | Approximate Size | Download Size | |
---|---|---|---|
Bases | Coverage | ||
10x | 122.40 Gbp | 146.83x | 80.298 GB |
Arima | 100.36 Gbp | 120.40x | 49.975 GB |
PacBio SubReads | 47.16 Gbp | 56.57x | 84.723 GB |
Coverage based on genome size 0.83 Gbp.
Last upload on 12 April 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Sparus_aurata/fSpaAur1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sparus_aurata/fSpaAur1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sparus_aurata/fSpaAur1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Sparus_aurata/fSpaAur1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sparus_aurata/fSpaAur1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 14 March 2019
fSpaAur1.pri.cur.20190314.fasta.gz (225 MB)
Version assembly_curated from 14 March 2019
fSpaAur1.pri.cur.20190314.fasta.gz (225 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 7 | 9.55 Mbp | 2 | 40.12 Mbp |
20 | 17 | 7.24 Mbp | 4 | 37.95 Mbp |
30 | 31 | 5.24 Mbp | 6 | 37.01 Mbp |
40 | 49 | 4.03 Mbp | 8 | 36.13 Mbp |
50 | 74 | 2.86 Mbp | 10 | 35.79 Mbp |
60 | 107 | 2.13 Mbp | 13 | 35.16 Mbp |
70 | 157 | 1.31 Mbp | 15 | 31.86 Mbp |
80 | 245 | 0.71 Mbp | 18 | 30.53 Mbp |
90 | 426 | 0.31 Mbp | 21 | 28.39 Mbp |
100 | 1224 | 2 bp | 174 | 20.81 Kbp |
1.000x | 1225 | 0.83 Gbp | 175 | 0.83 Gbp |
NG based on genome size 0.83 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 14 March 2019
fSpaAur1.alt.cur.20190314.fasta.gz (196 MB)
Version assembly_curated from 14 March 2019
fSpaAur1.alt.cur.20190314.fasta.gz (196 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 91 | 0.51 Mbp | 91 | 0.51 Mbp |
20 | 257 | 0.34 Mbp | 257 | 0.34 Mbp |
30 | 486 | 0.25 Mbp | 486 | 0.25 Mbp |
40 | 791 | 0.19 Mbp | 791 | 0.19 Mbp |
50 | 1183 | 0.15 Mbp | 1183 | 0.15 Mbp |
60 | 1685 | 0.12 Mbp | 1685 | 0.12 Mbp |
70 | 2348 | 87.70 Kbp | 2347 | 87.73 Kbp |
80 | 3239 | 64.06 Kbp | 3238 | 64.08 Kbp |
90 | 4543 | 40.95 Kbp | 4542 | 40.95 Kbp |
100 | 7240 | 125 bp | 7238 | 125 bp |
1.000x | 7241 | 0.67 Gbp | 7239 | 0.67 Gbp |
NG based on genome size 0.83 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
fSpaAur1.MT.20191003.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 3 October 2019
fSpaAur1.MT.20191003.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.