Sphaeramia orbicularis

orbiculate cardinalfish


Information

CC BY-SA 3.0 Sushi Girl1995 (wikimedia)

Raw Data

Datatype Approximate Coverage Download Size
10xN/A76.550 GB
ArimaN/A85.337 GB
BionanoN/A1.154 GB
PacBio ScrapsN/A145.484 GB
PacBio SubReadsN/A121.103 GB
No genome size estimate available.
Last upload on 19 March 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/pacbio/ . --exclude "*scraps.bam"

Individual 1 Assemblies

Primary
Version assembly_cambridge from 25 March 2019
fSphaOr1.pri.asm.20190325.fasta.gz (416 MB)

Contigs Scaffolds
NG LG Len LG Len
10 14 7.68 Mbp 2 61.35 Mbp
20 38 4.94 Mbp 4 54.18 Mbp
30 71 3.88 Mbp 7 51.80 Mbp
40 113 2.99 Mbp 10 48.86 Mbp
50 171 2.08 Mbp 13 46.10 Mbp
60 254 1.42 Mbp 16 44.41 Mbp
70 392 0.81 Mbp 19 33.63 Mbp
80 666 0.34 Mbp 29 6.70 Mbp
90 1366 0.14 Mbp 117 0.56 Mbp
100 3385 65 bp 1477 1.11 Kbp
1.000x 3386 1.44 Gbp 1478 1.45 Gbp
Alternate
Version assembly_cambridge from 25 March 2019
fSphaOr1.alt.asm.20190325.fasta.gz (299 MB)

Contigs Scaffolds
NG LG Len LG Len
10 101 0.76 Mbp 101 0.76 Mbp
20 262 0.55 Mbp 262 0.55 Mbp
30 477 0.43 Mbp 477 0.43 Mbp
40 746 0.34 Mbp 746 0.34 Mbp
50 1089 0.27 Mbp 1089 0.27 Mbp
60 1515 0.22 Mbp 1515 0.22 Mbp
70 2040 0.18 Mbp 2040 0.18 Mbp
80 2717 0.13 Mbp 2717 0.13 Mbp
90 3656 89.42 Kbp 3656 89.42 Kbp
100 5833 397 bp 5833 397 bp
1.000x 5834 1.03 Gbp 5834 1.03 Gbp
No genome size estimate available.

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