Sphaeramia orbicularis

orbiculate cardinalfish


Information

Resource
NCBI Taxonomy Browser NCBI:txid375764

Resource Primary Assembly Alternate Assembly
GenBank GCA_902148855.1 GCA_902148825.1
ENA GCA_902148855.1 GCA_902148825.1
UCSC Genome Browser GCA_902148855.1 GCA_902148825.1

CC BY-SA 3.0 Sushi Girl1995 (wikimedia)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x122.18 Gbp90.99x76.550 GB
Arima140.49 Gbp104.63x85.337 GB
Bionano794.78 Gbp591.95x1.154 GB
PacBio SubReads70.17 Gbp52.26x121.103 GB
Coverage based on genome size 1.34 Gbp.
Last upload on 19 March 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 19 June 2019
fSphaOr1.pri.cur.20190619.fasta.gz (378 MB)

Contigs Scaffolds
NG LG Len LG Len
10 13 7.85 Mbp 1 63.27 Mbp
20 34 5.43 Mbp 3 62.08 Mbp
30 63 4.02 Mbp 6 59.52 Mbp
40 100 3.23 Mbp 8 57.84 Mbp
50 147 2.36 Mbp 10 57.17 Mbp
60 214 1.69 Mbp 13 56.00 Mbp
70 312 1.07 Mbp 15 55.08 Mbp
80 480 0.58 Mbp 18 53.31 Mbp
90 853 0.23 Mbp 20 47.72 Mbp
100 2183 344 bp 339 1.11 Kbp
1.000x 2184 1.34 Gbp 340 1.34 Gbp
NG based on genome size 1.34 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 19 June 2019
fSphaOr1.alt.cur.20190619.fasta.gz (324 MB)

Contigs Scaffolds
NG LG Len LG Len
10 114 0.74 Mbp 114 0.74 Mbp
20 300 0.52 Mbp 299 0.52 Mbp
30 551 0.40 Mbp 548 0.41 Mbp
40 872 0.31 Mbp 865 0.31 Mbp
50 1285 0.25 Mbp 1273 0.25 Mbp
60 1798 0.20 Mbp 1780 0.20 Mbp
70 2443 0.16 Mbp 2413 0.16 Mbp
80 3287 0.12 Mbp 3239 0.12 Mbp
90 4459 78.01 Kbp 4386 79.87 Kbp
100 7037 65 bp 6895 397 bp
1.000x 7038 1.13 Gbp 6896 1.14 Gbp
NG based on genome size 1.34 Gbp.

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