Sphaeramia orbicularis

orbiculate cardinalfish


Information

NCBI Taxonomy Browser
Primary assembly in GenBank or ENA
Alternate assembly in GenBank or ENA
CC BY-SA 3.0 Sushi Girl1995 (wikimedia)

Raw Data

Datatype Approximate Coverage Download Size
10xN/A76.550 GB
ArimaN/A85.337 GB
BionanoN/A1.154 GB
PacBio SubReadsN/A121.103 GB
No genome size estimate available.
Last upload on 19 March 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sphaeramia_orbicularis/fSphaOr1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Primary assembly in GenBank or ENA
Alternate assembly in GenBank or ENA
Individual 1 Primary Assembly
Version assembly_curated from 19 June 2019
fSphaOr1.pri.cur.20190619.fasta.gz (378 MB)

Contigs Scaffolds
NG LG Len LG Len
10 13 7.85 Mbp 1 63.27 Mbp
20 34 5.43 Mbp 3 62.08 Mbp
30 63 4.02 Mbp 6 59.52 Mbp
40 100 3.23 Mbp 8 57.84 Mbp
50 147 2.36 Mbp 10 57.17 Mbp
60 214 1.69 Mbp 13 56.00 Mbp
70 312 1.07 Mbp 15 55.08 Mbp
80 480 0.58 Mbp 18 53.31 Mbp
90 853 0.23 Mbp 20 47.72 Mbp
100 2183 344 bp 339 1.11 Kbp
1.000x 2184 1.34 Gbp 340 1.34 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 19 June 2019
fSphaOr1.alt.cur.20190619.fasta.gz (324 MB)

Contigs Scaffolds
NG LG Len LG Len
10 114 0.74 Mbp 114 0.74 Mbp
20 300 0.52 Mbp 299 0.52 Mbp
30 551 0.40 Mbp 548 0.41 Mbp
40 872 0.31 Mbp 865 0.31 Mbp
50 1285 0.25 Mbp 1273 0.25 Mbp
60 1798 0.20 Mbp 1780 0.20 Mbp
70 2443 0.16 Mbp 2413 0.16 Mbp
80 3287 0.12 Mbp 3239 0.12 Mbp
90 4459 78.01 Kbp 4386 79.87 Kbp
100 7037 65 bp 6895 397 bp
1.000x 7038 1.13 Gbp 6896 1.14 Gbp
NG based on each assembly size.
(No genome size estimate available.)

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