Sterna hirundo

common tern


Information

NCBI Taxonomy Browser
CC BY 2.0 Frank Vassen (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10x169.30x123.351 GB
Arima79.62x57.063 GB
Bionano698.35x1.693 GB
PacBio SubReads67.91x162.558 GB
Coverage based on genome size 1.40 Gbp.
Last upload on 5 June 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Sterna_hirundo/bSteHir1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sterna_hirundo/bSteHir1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sterna_hirundo/bSteHir1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sterna_hirundo/bSteHir1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 20 August 2019
bSteHir1.pri.cur.20190820.fasta.gz (358 MB)

Contigs Scaffolds
NG LG Len LG Len
10 2 45.44 Mbp 0 220.15 Mbp
20 5 35.39 Mbp 1 166.72 Mbp
30 10 26.64 Mbp 2 132.03 Mbp
40 15 22.54 Mbp 3 85.55 Mbp
50 22 18.75 Mbp 5 83.25 Mbp
60 30 13.29 Mbp 6 71.80 Mbp
70 43 7.70 Mbp 9 46.48 Mbp
80 74 2.82 Mbp 13 14.80 Mbp
90 - - - -
100 - - - -
0.871x 327 1.22 Gbp 122 1.23 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 20 August 2019
bSteHir1.alt.cur.20190820.fasta.gz (347 MB)

Contigs Scaffolds
NG LG Len LG Len
10 8 14.14 Mbp 8 14.14 Mbp
20 20 10.03 Mbp 20 10.03 Mbp
30 36 7.48 Mbp 36 7.48 Mbp
40 58 5.88 Mbp 58 5.88 Mbp
50 85 4.33 Mbp 85 4.33 Mbp
60 126 2.68 Mbp 126 2.68 Mbp
70 198 1.27 Mbp 198 1.27 Mbp
80 750 73.03 Kbp 750 73.03 Kbp
90 - - - -
100 - - - -
0.840x 2235 1.18 Gbp 2235 1.18 Gbp
NG based on genome size 1.40 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 18 September 2019
bSteHir1.MT.20190918.fasta.gz (6 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.