Sterna hirundo
common tern
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid108405 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_009819605.1 | GCA_009819645.1 |
| ENA | GCA_009819605.1 | GCA_009819645.1 |
| UCSC Genome Browser | GCA_009819605.1 | GCA_009819645.1 |
CC BY 2.0 Frank Vassen (flickr)
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 237.03 Gbp | 169.30x | 123.351 GB |
| Arima | 111.46 Gbp | 79.62x | 57.063 GB |
| Bionano | 977.69 Gbp | 698.35x | 1.693 GB |
| PacBio SubReads | 95.07 Gbp | 67.91x | 162.558 GB |
Coverage based on genome size 1.40 Gbp.
Last upload on 5 June 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Sterna_hirundo/bSteHir1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sterna_hirundo/bSteHir1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sterna_hirundo/bSteHir1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sterna_hirundo/bSteHir1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Sterna_hirundo/bSteHir1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sterna_hirundo/bSteHir1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Sterna_hirundo/bSteHir1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 20 August 2019
bSteHir1.pri.cur.20190820.fasta.gz (358 MB)
Version assembly_curated from 20 August 2019
bSteHir1.pri.cur.20190820.fasta.gz (358 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 2 | 45.44 Mbp | 0 | 220.15 Mbp |
| 20 | 5 | 35.39 Mbp | 1 | 166.72 Mbp |
| 30 | 10 | 26.64 Mbp | 2 | 132.03 Mbp |
| 40 | 15 | 22.54 Mbp | 3 | 85.55 Mbp |
| 50 | 22 | 18.75 Mbp | 5 | 83.25 Mbp |
| 60 | 30 | 13.29 Mbp | 6 | 71.80 Mbp |
| 70 | 43 | 7.70 Mbp | 9 | 46.48 Mbp |
| 80 | 74 | 2.82 Mbp | 13 | 14.80 Mbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.871x | 327 | 1.22 Gbp | 122 | 1.23 Gbp |
NG based on genome size 1.40 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 20 August 2019
bSteHir1.alt.cur.20190820.fasta.gz (347 MB)
Version assembly_curated from 20 August 2019
bSteHir1.alt.cur.20190820.fasta.gz (347 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 8 | 14.14 Mbp | 8 | 14.14 Mbp |
| 20 | 20 | 10.03 Mbp | 20 | 10.03 Mbp |
| 30 | 36 | 7.48 Mbp | 36 | 7.48 Mbp |
| 40 | 58 | 5.88 Mbp | 58 | 5.88 Mbp |
| 50 | 85 | 4.33 Mbp | 85 | 4.33 Mbp |
| 60 | 126 | 2.68 Mbp | 126 | 2.68 Mbp |
| 70 | 198 | 1.27 Mbp | 198 | 1.27 Mbp |
| 80 | 750 | 73.03 Kbp | 750 | 73.03 Kbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.840x | 2235 | 1.18 Gbp | 2235 | 1.18 Gbp |
NG based on genome size 1.40 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 18 September 2019
bSteHir1.MT.20190918.fasta.gz (6 KB)
Version assembly_MT_rockefeller from 18 September 2019
bSteHir1.MT.20190918.fasta.gz (6 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.