Streptopelia turtur
turtle dove
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid177155 |
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | GCA_901699155.2 | GCA_901699165.2 |
ENA | GCA_901699155.2 | GCA_901699165.2 |
UCSC Genome Browser | GCA_901699155.2 | GCA_901699165.2 |
CC BY-SA 2.0 Juan Emilio (wikimedia)
Raw Data
Datatype | Approximate Size | Download Size | |
---|---|---|---|
Bases | Coverage | ||
10x | 133.52 Gbp | 113.26x | 81.016 GB |
Arima | 123.74 Gbp | 104.96x | 58.781 GB |
Bionano | 347.68 Gbp | 294.91x | 0.536 GB |
PacBio SubReads | 61.73 Gbp | 52.36x | 107.985 GB |
Coverage based on genome size 1.18 Gbp.
Last upload on 29 January 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Streptopelia_turtur/bStrTur1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Streptopelia_turtur/bStrTur1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Streptopelia_turtur/bStrTur1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Streptopelia_turtur/bStrTur1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Streptopelia_turtur/bStrTur1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Streptopelia_turtur/bStrTur1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Streptopelia_turtur/bStrTur1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 23 May 2019
bStrTur1.pri.cur.20190523.fasta.gz (344 MB)
Version assembly_curated from 23 May 2019
bStrTur1.pri.cur.20190523.fasta.gz (344 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 8 | 10.62 Mbp | 0 | 221.44 Mbp |
20 | 21 | 7.85 Mbp | 1 | 169.96 Mbp |
30 | 38 | 6.16 Mbp | 1 | 169.96 Mbp |
40 | 60 | 4.72 Mbp | 2 | 125.29 Mbp |
50 | 88 | 3.73 Mbp | 3 | 80.15 Mbp |
60 | 122 | 2.96 Mbp | 5 | 70.85 Mbp |
70 | 169 | 2.10 Mbp | 8 | 34.57 Mbp |
80 | 242 | 1.21 Mbp | 12 | 22.27 Mbp |
90 | 399 | 0.48 Mbp | 19 | 10.84 Mbp |
100 | 1250 | 222 bp | 356 | 5.49 Kbp |
1.000x | 1251 | 1.18 Gbp | 357 | 1.18 Gbp |
NG based on genome size 1.18 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 23 May 2019
bStrTur1.alt.cur.20190523.fasta.gz (308 MB)
Version assembly_curated from 23 May 2019
bStrTur1.alt.cur.20190523.fasta.gz (308 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 35 | 2.23 Mbp | 35 | 2.23 Mbp |
20 | 89 | 1.68 Mbp | 89 | 1.68 Mbp |
30 | 159 | 1.29 Mbp | 159 | 1.29 Mbp |
40 | 250 | 1.01 Mbp | 250 | 1.01 Mbp |
50 | 368 | 0.78 Mbp | 368 | 0.78 Mbp |
60 | 523 | 0.58 Mbp | 523 | 0.58 Mbp |
70 | 736 | 0.41 Mbp | 736 | 0.41 Mbp |
80 | 1055 | 0.26 Mbp | 1055 | 0.26 Mbp |
90 | 1635 | 0.13 Mbp | 1635 | 0.13 Mbp |
100 | 3332 | 243 bp | 3332 | 243 bp |
1.000x | 3333 | 1.04 Gbp | 3333 | 1.04 Gbp |
NG based on genome size 1.18 Gbp.
Data Use Policy
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please abide by the Data Use Policy
and contact us with any questions.