Streptopelia turtur

turtle dove


Information

Resource
NCBI Taxonomy Browser NCBI:txid177155

Resource Primary Assembly Alternate Assembly
GenBank GCA_901699155.2 GCA_901699165.2
ENA GCA_901699155.2 GCA_901699165.2
UCSC Genome Browser GCA_901699155.2 GCA_901699165.2

CC BY-SA 2.0 Juan Emilio (wikimedia)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x133.52 Gbp113.26x81.016 GB
Arima123.74 Gbp104.96x58.781 GB
Bionano347.68 Gbp294.91x0.536 GB
PacBio SubReads61.73 Gbp52.36x107.985 GB
Coverage based on genome size 1.18 Gbp.
Last upload on 29 January 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Streptopelia_turtur/bStrTur1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Streptopelia_turtur/bStrTur1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Streptopelia_turtur/bStrTur1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Streptopelia_turtur/bStrTur1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 23 May 2019
bStrTur1.pri.cur.20190523.fasta.gz (344 MB)

Contigs Scaffolds
NG LG Len LG Len
10 8 10.62 Mbp 0 221.44 Mbp
20 21 7.85 Mbp 1 169.96 Mbp
30 38 6.16 Mbp 1 169.96 Mbp
40 60 4.72 Mbp 2 125.29 Mbp
50 88 3.73 Mbp 3 80.15 Mbp
60 122 2.96 Mbp 5 70.85 Mbp
70 169 2.10 Mbp 8 34.57 Mbp
80 242 1.21 Mbp 12 22.27 Mbp
90 399 0.48 Mbp 19 10.84 Mbp
100 1250 222 bp 356 5.49 Kbp
1.000x 1251 1.18 Gbp 357 1.18 Gbp
NG based on genome size 1.18 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 23 May 2019
bStrTur1.alt.cur.20190523.fasta.gz (308 MB)

Contigs Scaffolds
NG LG Len LG Len
10 35 2.23 Mbp 35 2.23 Mbp
20 89 1.68 Mbp 89 1.68 Mbp
30 159 1.29 Mbp 159 1.29 Mbp
40 250 1.01 Mbp 250 1.01 Mbp
50 368 0.78 Mbp 368 0.78 Mbp
60 523 0.58 Mbp 523 0.58 Mbp
70 736 0.41 Mbp 736 0.41 Mbp
80 1055 0.26 Mbp 1055 0.26 Mbp
90 1635 0.13 Mbp 1635 0.13 Mbp
100 3332 243 bp 3332 243 bp
1.000x 3333 1.04 Gbp 3333 1.04 Gbp
NG based on genome size 1.18 Gbp.

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