Strigops habroptilus

owl parrot


Information

NCBI Taxonomy Browser
Primary assembly in GenBank or ENA
Alternate assembly in GenBank or ENA
CC BY-NC 2.0 Jake Osborne (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10x110.10x63.445 GB
Arima95.69x60.433 GB
Bionano548.36x0.837 GB
PacBio SubReads89.02x388.442 GB
Coverage based on genome size 1.19 Gbp.
Last upload on 9 June 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Strigops_habroptilus/bStrHab1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Strigops_habroptilus/bStrHab1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Strigops_habroptilus/bStrHab1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Strigops_habroptilus/bStrHab1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"

Assemblies

Primary assembly in GenBank or ENA
Alternate assembly in GenBank or ENA
Individual 1 Primary Assembly
Version assembly_curated from 7 September 2018
bStrHab1.pri.cur.20180907.fasta.gz (333 MB)

Contigs Scaffolds
NG LG Len LG Len
10 4 19.20 Mbp 0 172.12 Mbp
20 12 15.35 Mbp 1 104.14 Mbp
30 20 13.03 Mbp 2 101.25 Mbp
40 30 11.19 Mbp 4 86.46 Mbp
50 42 9.11 Mbp 5 83.15 Mbp
60 56 6.98 Mbp 7 69.92 Mbp
70 75 5.25 Mbp 8 63.76 Mbp
80 104 3.19 Mbp 11 39.19 Mbp
90 165 0.91 Mbp 16 12.88 Mbp
100 - - - -
0.954x 461 1.14 Gbp 99 1.17 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 11 December 2018
bStrHab1.alt.cur.20181211.fasta.gz (86 MB)

Contigs Scaffolds
NG LG Len LG Len
10 323 0.19 Mbp 323 0.19 Mbp
20 1778 36.79 Kbp 1771 37.13 Kbp
30 - - - -
40 - - - -
50 - - - -
60 - - - -
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.239x 3739 285.70 Mbp 3728 285.71 Mbp
NG based on genome size 1.19 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_mt_milan from 4 March 2019
bStrHab1.MT.20190304.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.