Strigops habroptilus
kakapo
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid57251 |
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | GCA_004027225.2 | GCA_004011185.1 |
ENA | GCA_004027225.2 | GCA_004011185.1 |
UCSC Genome Browser | GCA_004027225.2 | GCA_004011185.1 |
CC BY-NC 2.0 Jake Osborne (flickr)
Raw Data
Datatype | Approximate Size | Download Size | |
---|---|---|---|
Bases | Coverage | ||
10x | 131.40 Gbp | 110.10x | 63.445 GB |
Arima | 114.19 Gbp | 95.69x | 60.433 GB |
Bionano | 654.42 Gbp | 548.36x | 0.837 GB |
PacBio SubReads | 106.23 Gbp | 89.02x | 388.442 GB |
Coverage based on genome size 1.19 Gbp.
Last upload on 15 September 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Strigops_habroptilus/bStrHab1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Strigops_habroptilus/bStrHab1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Strigops_habroptilus/bStrHab1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Strigops_habroptilus/bStrHab1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Strigops_habroptilus/bStrHab1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Strigops_habroptilus/bStrHab1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Strigops_habroptilus/bStrHab1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 8 November 2019
bStrHab1.pri.cur.20191108.fasta.gz (333 MB)
Version assembly_curated from 8 November 2019
bStrHab1.pri.cur.20191108.fasta.gz (333 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 4 | 19.20 Mbp | 0 | 155.64 Mbp |
20 | 12 | 15.35 Mbp | 1 | 123.02 Mbp |
30 | 20 | 13.03 Mbp | 2 | 101.87 Mbp |
40 | 30 | 11.19 Mbp | 4 | 86.46 Mbp |
50 | 42 | 9.11 Mbp | 5 | 83.24 Mbp |
60 | 56 | 6.98 Mbp | 7 | 70.13 Mbp |
70 | 75 | 5.25 Mbp | 8 | 63.49 Mbp |
80 | 104 | 3.19 Mbp | 11 | 39.19 Mbp |
90 | 165 | 0.91 Mbp | 16 | 12.31 Mbp |
100 | - | - | - | - |
0.954x | 462 | 1.14 Gbp | 89 | 1.15 Gbp |
NG based on genome size 1.19 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 11 December 2018
bStrHab1.alt.cur.20181211.fasta.gz (86 MB)
Version assembly_curated from 11 December 2018
bStrHab1.alt.cur.20181211.fasta.gz (86 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 323 | 0.19 Mbp | 323 | 0.19 Mbp |
20 | 1778 | 36.79 Kbp | 1771 | 37.13 Kbp |
30 | - | - | - | - |
40 | - | - | - | - |
50 | - | - | - | - |
60 | - | - | - | - |
70 | - | - | - | - |
80 | - | - | - | - |
90 | - | - | - | - |
100 | - | - | - | - |
0.239x | 3739 | 285.70 Mbp | 3728 | 285.71 Mbp |
NG based on genome size 1.19 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_curated from 11 December 2018
bStrHab1.pri.cur.20181211.MT.fasta.gz (5 KB)
Version assembly_curated from 11 December 2018
bStrHab1.pri.cur.20181211.MT.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.