Strigops habroptilus

kakapo


Information

NCBI Taxonomy Browser
Primary assembly in GenBank or ENA
Alternate assembly in GenBank or ENA
CC BY-NC 2.0 Jake Osborne (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10x110.10x63.445 GB
Arima95.69x60.433 GB
Bionano548.36x0.837 GB
PacBio SubReads89.02x388.442 GB
Coverage based on genome size 1.19 Gbp.
Last upload on 15 September 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Strigops_habroptilus/bStrHab1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Strigops_habroptilus/bStrHab1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Strigops_habroptilus/bStrHab1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Strigops_habroptilus/bStrHab1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Primary assembly in GenBank or ENA
Alternate assembly in GenBank or ENA
Individual 1 Primary Assembly
Version assembly_curated from 8 November 2019
bStrHab1.pri.cur.20191108.fasta.gz (333 MB)

Contigs Scaffolds
NG LG Len LG Len
10 4 19.20 Mbp 0 155.64 Mbp
20 12 15.35 Mbp 1 123.02 Mbp
30 20 13.03 Mbp 2 101.87 Mbp
40 30 11.19 Mbp 4 86.46 Mbp
50 42 9.11 Mbp 5 83.24 Mbp
60 56 6.98 Mbp 7 70.13 Mbp
70 75 5.25 Mbp 8 63.49 Mbp
80 104 3.19 Mbp 11 39.19 Mbp
90 165 0.91 Mbp 16 12.31 Mbp
100 - - - -
0.954x 462 1.14 Gbp 89 1.15 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 11 December 2018
bStrHab1.alt.cur.20181211.fasta.gz (86 MB)

Contigs Scaffolds
NG LG Len LG Len
10 323 0.19 Mbp 323 0.19 Mbp
20 1778 36.79 Kbp 1771 37.13 Kbp
30 - - - -
40 - - - -
50 - - - -
60 - - - -
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.239x 3739 285.70 Mbp 3728 285.71 Mbp
NG based on genome size 1.19 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
bStrHab1.MT.20191003.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.