Strigops habroptilus

kakapo


Information

Resource
NCBI Taxonomy Browser NCBI:txid57251

Resource Primary Assembly Alternate Assembly
GenBank GCA_004027225.2 GCA_004011185.1
ENA GCA_004027225.2 GCA_004011185.1
UCSC Genome Browser GCA_004027225.2 GCA_004011185.1

CC BY-NC 2.0 Jake Osborne (flickr)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x131.40 Gbp110.10x63.445 GB
Arima114.19 Gbp95.69x60.433 GB
Bionano654.42 Gbp548.36x0.837 GB
PacBio SubReads106.23 Gbp89.02x388.442 GB
Coverage based on genome size 1.19 Gbp.
Last upload on 15 September 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Strigops_habroptilus/bStrHab1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Strigops_habroptilus/bStrHab1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Strigops_habroptilus/bStrHab1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Strigops_habroptilus/bStrHab1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 8 November 2019
bStrHab1.pri.cur.20191108.fasta.gz (333 MB)

Contigs Scaffolds
NG LG Len LG Len
10 4 19.20 Mbp 0 155.64 Mbp
20 12 15.35 Mbp 1 123.02 Mbp
30 20 13.03 Mbp 2 101.87 Mbp
40 30 11.19 Mbp 4 86.46 Mbp
50 42 9.11 Mbp 5 83.24 Mbp
60 56 6.98 Mbp 7 70.13 Mbp
70 75 5.25 Mbp 8 63.49 Mbp
80 104 3.19 Mbp 11 39.19 Mbp
90 165 0.91 Mbp 16 12.31 Mbp
100 - - - -
0.954x 462 1.14 Gbp 89 1.15 Gbp
NG based on genome size 1.19 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 11 December 2018
bStrHab1.alt.cur.20181211.fasta.gz (86 MB)

Contigs Scaffolds
NG LG Len LG Len
10 323 0.19 Mbp 323 0.19 Mbp
20 1778 36.79 Kbp 1771 37.13 Kbp
30 - - - -
40 - - - -
50 - - - -
60 - - - -
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.239x 3739 285.70 Mbp 3728 285.71 Mbp
NG based on genome size 1.19 Gbp.

Individual 1 Mitochondrial Assembly
Version assembly_curated from 11 December 2018
bStrHab1.pri.cur.20181211.MT.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.