Taeniopygia guttata

zebra finch


Information

Resource
NCBI Taxonomy Browser NCBI:txid59729

Resource Primary Assembly Alternate Assembly
GenBank GCA_003957565.2 GCA_009859065.2 GCA_003957525.1 GCA_009859025.1
ENA GCA_003957565.2 GCA_009859065.2 GCA_003957525.1 GCA_009859025.1
UCSC Genome Browser GCA_003957565.2 GCA_009859065.2 GCA_003957525.1 GCA_009859025.1

Resource Maternal Assembly Paternal Assembly
GenBank GCA_008822115.3 GCA_008822125.1
ENA GCA_008822115.3 GCA_008822125.1
UCSC Genome Browser GCA_008822115.3 GCA_008822125.1
CC BY 2.0 Keith Gerstung (wikimedia)

Raw Data

Datatype Approximate Coverage Download Size
10x396.09x246.371 GB
Arima242.54x126.558 GB
Bionano1586.04x2.136 GB
Illumina134.05x71.694 GB
PacBio SubReads154.35x574.778 GB
Coverage based on genome size 1.04 Gbp.
Last upload on 12 February 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Taeniopygia_guttata/bTaeGut1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Taeniopygia_guttata/bTaeGut2/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Taeniopygia_guttata/bTaeGut3/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Taeniopygia_guttata/bTaeGut4/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Taeniopygia_guttata/bTaeGut1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Taeniopygia_guttata/bTaeGut2/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Taeniopygia_guttata/bTaeGut1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Taeniopygia_guttata/bTaeGut2/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Taeniopygia_guttata/bTaeGut3/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Taeniopygia_guttata/bTaeGut4/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Taeniopygia_guttata/bTaeGut1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Taeniopygia_guttata/bTaeGut2/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 23 October 2018
bTaeGut1.pri.cur.20181023.fasta.gz (282 MB)

Contigs Scaffolds
NG LG Len LG Len
10 1 45.19 Mbp 0 150.69 Mbp
20 4 31.80 Mbp 1 114.56 Mbp
30 8 20.11 Mbp 2 113.23 Mbp
40 13 17.57 Mbp 3 75.46 Mbp
50 20 12.08 Mbp 4 71.55 Mbp
60 30 9.21 Mbp 6 62.01 Mbp
70 43 6.91 Mbp 8 35.67 Mbp
80 63 4.17 Mbp 12 21.01 Mbp
90 97 2.05 Mbp 18 14.33 Mbp
100 217 0.25 Mbp 33 2.91 Mbp
1.019x 446 1.06 Gbp 134 1.06 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 23 October 2018
bTaeGut1.alt.cur.20181023.fasta.gz (282 MB)

Contigs Scaffolds
NG LG Len LG Len
10 5 13.57 Mbp 5 13.57 Mbp
20 16 7.61 Mbp 16 7.61 Mbp
30 32 5.49 Mbp 32 5.49 Mbp
40 55 3.92 Mbp 55 3.92 Mbp
50 87 2.52 Mbp 87 2.52 Mbp
60 141 1.51 Mbp 141 1.51 Mbp
70 231 0.83 Mbp 229 0.84 Mbp
80 546 0.11 Mbp 526 0.11 Mbp
90 3209 23.84 Kbp 3160 23.95 Kbp
100 - - - -
0.932x 5381 0.97 Gbp 5336 0.97 Gbp
NG based on genome size 1.04 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
bTaeGut1.MT.20191003.fasta.gz (5 KB)
Individual 2 Primary Assembly
Version assembly_curated from 12 November 2019
bTaeGut2.pri.cur.20191112.fasta.gz (313 MB)

Contigs Scaffolds
NG LG Len LG Len
10 5 14.25 Mbp 0 151.57 Mbp
20 13 10.60 Mbp 1 116.14 Mbp
30 25 7.72 Mbp 2 112.22 Mbp
40 41 5.46 Mbp 3 79.54 Mbp
50 62 4.15 Mbp 4 73.51 Mbp
60 90 3.20 Mbp 6 63.95 Mbp
70 129 2.27 Mbp 8 37.41 Mbp
80 186 1.42 Mbp 12 21.11 Mbp
90 281 0.82 Mbp 17 16.67 Mbp
100 541 0.18 Mbp 26 6.73 Mbp
1.047x 1329 1.08 Gbp 540 1.11 Gbp
Individual 2 Alternate Assembly
Version assembly_curated from 19 October 2018
bTaeGut2.alt.cur.20181019.fasta.gz (279 MB)

Contigs Scaffolds
NG LG Len LG Len
10 20 3.55 Mbp 20 3.55 Mbp
20 57 2.35 Mbp 57 2.35 Mbp
30 111 1.61 Mbp 111 1.61 Mbp
40 186 1.22 Mbp 186 1.22 Mbp
50 285 0.89 Mbp 285 0.89 Mbp
60 424 0.62 Mbp 423 0.63 Mbp
70 642 0.37 Mbp 638 0.37 Mbp
80 1089 0.13 Mbp 1077 0.13 Mbp
90 3487 21.03 Kbp 3466 21.14 Kbp
100 - - - -
0.915x 4693 0.95 Gbp 4677 0.95 Gbp
NG based on genome size 1.04 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
bTaeGut2.MT.20191003.fasta.gz (5 KB)
Individual 2 Maternal Assembly
Version assembly_curated from 24 January 2020
bTaeGut2.mat.cur.20200124.fasta.gz (284 MB)

Contigs Scaffolds
NG LG Len LG Len
10 5 16.01 Mbp 0 151.42 Mbp
20 13 9.61 Mbp 1 114.62 Mbp
30 26 7.45 Mbp 2 111.83 Mbp
40 41 6.08 Mbp 3 73.15 Mbp
50 60 5.14 Mbp 4 71.67 Mbp
60 83 3.77 Mbp 6 38.29 Mbp
70 116 2.56 Mbp 10 21.26 Mbp
80 170 1.42 Mbp 15 18.11 Mbp
90 286 0.49 Mbp 23 7.61 Mbp
100 - - - -
0.947x 788 0.98 Gbp 205 1.00 Gbp
Individual 2 Paternal Assembly
Version assembly_curated from 24 January 2020
bTaeGut2.pat.cur.20200124.fasta.gz (298 MB)

Contigs Scaffolds
NG LG Len LG Len
10 4 17.44 Mbp 0 151.90 Mbp
20 12 9.99 Mbp 1 114.38 Mbp
30 24 7.33 Mbp 2 111.45 Mbp
40 40 5.73 Mbp 3 78.98 Mbp
50 61 4.43 Mbp 4 71.34 Mbp
60 87 3.38 Mbp 6 61.90 Mbp
70 127 2.11 Mbp 8 34.84 Mbp
80 186 1.35 Mbp 12 20.43 Mbp
90 294 0.64 Mbp 18 13.71 Mbp
100 - - 42 0.75 Mbp
0.992x 1036 1.03 Gbp 202 1.05 Gbp
NG based on genome size 1.04 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.