Takifugu rubripes
torafugu
Information
CC BY-SA 2.5 OpenCage (wikimedia)
Raw Data
Datatype | Approximate Coverage | Download Size |
---|---|---|
10x | N/A | 73.884 GB |
Arima | N/A | 19.583 GB |
Bionano | N/A | 0.459 GB |
PacBio SubReads | N/A | 56.073 GB |
No genome size estimate available.
Last upload on 29 August 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Takifugu_rubripes/fTakRub1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Takifugu_rubripes/fTakRub1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Takifugu_rubripes/fTakRub1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Takifugu_rubripes/fTakRub1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Takifugu_rubripes/fTakRub1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Takifugu_rubripes/fTakRub1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Takifugu_rubripes/fTakRub1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 23 May 2019
fTakRub1.pri.cur.20190523.fasta.gz (108 MB)
Version assembly_curated from 23 May 2019
fTakRub1.pri.cur.20190523.fasta.gz (108 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 8.18 Mbp | 1 | 21.51 Mbp |
20 | 8 | 6.77 Mbp | 3 | 19.72 Mbp |
30 | 15 | 5.37 Mbp | 5 | 18.24 Mbp |
40 | 23 | 3.79 Mbp | 7 | 17.48 Mbp |
50 | 34 | 3.14 Mbp | 9 | 16.71 Mbp |
60 | 48 | 2.47 Mbp | 12 | 16.06 Mbp |
70 | 68 | 1.65 Mbp | 14 | 15.69 Mbp |
80 | 101 | 0.78 Mbp | 17 | 13.57 Mbp |
90 | 180 | 0.27 Mbp | 19 | 12.91 Mbp |
100 | 528 | 1.29 Kbp | 126 | 27.23 Kbp |
1.000x | 529 | 380.42 Mbp | 127 | 384.11 Mbp |
Individual 1 Alternate Assembly
Version assembly_curated from 23 May 2019
fTakRub1.alt.cur.20190523.fasta.gz (101 MB)
Version assembly_curated from 23 May 2019
fTakRub1.alt.cur.20190523.fasta.gz (101 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 29 | 0.83 Mbp | 27 | 0.88 Mbp |
20 | 80 | 0.57 Mbp | 77 | 0.60 Mbp |
30 | 151 | 0.43 Mbp | 146 | 0.44 Mbp |
40 | 243 | 0.33 Mbp | 236 | 0.35 Mbp |
50 | 359 | 0.27 Mbp | 349 | 0.28 Mbp |
60 | 505 | 0.21 Mbp | 491 | 0.22 Mbp |
70 | 689 | 0.17 Mbp | 672 | 0.17 Mbp |
80 | 927 | 0.13 Mbp | 906 | 0.13 Mbp |
90 | 1258 | 84.91 Kbp | 1232 | 86.41 Kbp |
100 | 2049 | 103 bp | 2011 | 103 bp |
1.000x | 2050 | 349.39 Mbp | 2012 | 350.02 Mbp |
NG based on each assembly size.
(No genome size estimate available.)
(No genome size estimate available.)
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
fTakRub1.MT.20191003.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 3 October 2019
fTakRub1.MT.20191003.fasta.gz (5 KB)
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