Takifugu rubripes

torafugu


Information

Resource
NCBI Taxonomy Browser NCBI:txid31033

Resource Primary Assembly Alternate Assembly
GenBank GCA_901000745.3
ENA GCA_901000745.3
UCSC Genome Browser GCA_901000745.3

CC BY-SA 2.5 OpenCage (wikimedia)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x114.37 Gbp297.76x73.884 GB
Arima38.03 Gbp99.00x19.583 GB
Bionano337.13 Gbp877.69x0.459 GB
PacBio SubReads31.89 Gbp83.01x56.073 GB
Coverage based on genome size 384.11 Mbp.
Last upload on 29 August 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Takifugu_rubripes/fTakRub1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Takifugu_rubripes/fTakRub1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Takifugu_rubripes/fTakRub1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Takifugu_rubripes/fTakRub1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 23 May 2019
fTakRub1.pri.cur.20190523.fasta.gz (108 MB)

Contigs Scaffolds
NG LG Len LG Len
10 3 8.18 Mbp 1 21.51 Mbp
20 8 6.77 Mbp 3 19.72 Mbp
30 15 5.37 Mbp 5 18.24 Mbp
40 23 3.79 Mbp 7 17.48 Mbp
50 34 3.14 Mbp 9 16.71 Mbp
60 48 2.47 Mbp 12 16.06 Mbp
70 68 1.65 Mbp 14 15.69 Mbp
80 101 0.78 Mbp 17 13.57 Mbp
90 180 0.27 Mbp 19 12.91 Mbp
100 528 1.29 Kbp 126 27.23 Kbp
1.000x 529 380.42 Mbp 127 384.11 Mbp
Individual 1 Alternate Assembly
Version assembly_curated from 23 May 2019
fTakRub1.alt.cur.20190523.fasta.gz (101 MB)

Contigs Scaffolds
NG LG Len LG Len
10 29 0.83 Mbp 27 0.88 Mbp
20 80 0.57 Mbp 77 0.60 Mbp
30 151 0.43 Mbp 146 0.44 Mbp
40 243 0.33 Mbp 236 0.35 Mbp
50 359 0.27 Mbp 349 0.28 Mbp
60 505 0.21 Mbp 491 0.22 Mbp
70 689 0.17 Mbp 672 0.17 Mbp
80 927 0.13 Mbp 906 0.13 Mbp
90 1258 84.91 Kbp 1232 86.41 Kbp
100 2049 103 bp 2011 103 bp
1.000x 2050 349.39 Mbp 2012 350.02 Mbp
NG based on genome size 384.11 Mbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
fTakRub1.MT.20191003.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.