Thalassophryne amazonica
prehistoric monster fish
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid390379 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_902500255.1 | GCA_902500245.1 |
| ENA | GCA_902500255.1 | GCA_902500245.1 |
| UCSC Genome Browser | GCA_902500255.1 | GCA_902500245.1 |
Copyright Ralf Britz/NHM, used with permission
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 240.23 Gbp | 98.19x | 161.400 GB |
| Arima | 273.49 Gbp | 111.78x | 165.309 GB |
| Bionano | 808.63 Gbp | 330.51x | 1.247 GB |
| Dovetail Genomics | 287.34 Gbp | 117.44x | 172.258 GB |
| PacBio SubReads | 134.15 Gbp | 54.83x | 235.823 GB |
Coverage based on genome size 2.45 Gbp.
Last upload on 31 May 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Thalassophryne_amazonica/fThaAma1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thalassophryne_amazonica/fThaAma1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thalassophryne_amazonica/fThaAma1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thalassophryne_amazonica/fThaAma1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thalassophryne_amazonica/fThaAma1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Thalassophryne_amazonica/fThaAma1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thalassophryne_amazonica/fThaAma1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thalassophryne_amazonica/fThaAma1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thalassophryne_amazonica/fThaAma1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 26 September 2019
fThaAma1.pri.cur.20190926.fasta.gz (702 MB)
Version assembly_curated from 26 September 2019
fThaAma1.pri.cur.20190926.fasta.gz (702 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 28 | 5.89 Mbp | 1 | 160.46 Mbp |
| 20 | 76 | 4.41 Mbp | 3 | 146.42 Mbp |
| 30 | 138 | 3.51 Mbp | 4 | 133.90 Mbp |
| 40 | 215 | 2.83 Mbp | 6 | 122.56 Mbp |
| 50 | 310 | 2.32 Mbp | 8 | 118.42 Mbp |
| 60 | 434 | 1.67 Mbp | 10 | 117.38 Mbp |
| 70 | 607 | 1.18 Mbp | 13 | 99.27 Mbp |
| 80 | 864 | 0.78 Mbp | 15 | 92.12 Mbp |
| 90 | 1284 | 0.40 Mbp | 18 | 72.82 Mbp |
| 100 | 3017 | 40 bp | 463 | 890 bp |
| 1.000x | 3018 | 2.43 Gbp | 464 | 2.45 Gbp |
NG based on genome size 2.45 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 26 September 2019
fThaAma1.alt.cur.20190926.fasta.gz (513 MB)
Version assembly_curated from 26 September 2019
fThaAma1.alt.cur.20190926.fasta.gz (513 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 472 | 0.29 Mbp | 472 | 0.29 Mbp |
| 20 | 1186 | 0.22 Mbp | 1185 | 0.22 Mbp |
| 30 | 2106 | 0.17 Mbp | 2105 | 0.17 Mbp |
| 40 | 3236 | 0.14 Mbp | 3234 | 0.14 Mbp |
| 50 | 4594 | 0.12 Mbp | 4593 | 0.12 Mbp |
| 60 | 6225 | 98.75 Kbp | 6224 | 98.76 Kbp |
| 70 | 8197 | 81.00 Kbp | 8195 | 81.02 Kbp |
| 80 | 10646 | 63.97 Kbp | 10643 | 63.98 Kbp |
| 90 | 13875 | 46.24 Kbp | 13872 | 46.25 Kbp |
| 100 | 19586 | 193 bp | 19578 | 193 bp |
| 1.000x | 19587 | 1.77 Gbp | 19579 | 1.77 Gbp |
NG based on genome size 2.45 Gbp.
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