Thalassophryne amazonica
prehistoric monster fish
Information
Copyright Ralf Britz/NHM, used with permission
Raw Data
| Datatype | Approximate Coverage | Download Size |
|---|---|---|
| 10x | N/A | 161.400 GB |
| Arima | N/A | 165.309 GB |
| Bionano | N/A | 1.247 GB |
| Dovetail Genomics | N/A | 172.258 GB |
| PacBio Scraps | N/A | 409.132 GB |
| PacBio SubReads | N/A | 235.823 GB |
No genome size estimate available.
Last upload on 31 May 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Thalassophryne_amazonica/fThaAma1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thalassophryne_amazonica/fThaAma1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thalassophryne_amazonica/fThaAma1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thalassophryne_amazonica/fThaAma1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thalassophryne_amazonica/fThaAma1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Thalassophryne_amazonica/fThaAma1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thalassophryne_amazonica/fThaAma1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thalassophryne_amazonica/fThaAma1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thalassophryne_amazonica/fThaAma1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_cambridge from 31 May 2019
fThaAma1.pri.asm.20190531.fasta.gz (723 MB)
Version assembly_cambridge from 31 May 2019
fThaAma1.pri.asm.20190531.fasta.gz (723 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 28 | 5.89 Mbp | 2 | 96.78 Mbp |
| 20 | 76 | 4.41 Mbp | 5 | 89.25 Mbp |
| 30 | 138 | 3.53 Mbp | 7 | 85.70 Mbp |
| 40 | 214 | 2.85 Mbp | 11 | 61.08 Mbp |
| 50 | 309 | 2.33 Mbp | 15 | 56.24 Mbp |
| 60 | 433 | 1.67 Mbp | 19 | 52.29 Mbp |
| 70 | 606 | 1.18 Mbp | 26 | 33.50 Mbp |
| 80 | 862 | 0.78 Mbp | 36 | 14.62 Mbp |
| 90 | 1282 | 0.40 Mbp | 64 | 5.06 Mbp |
| 100 | 3013 | 40 bp | 647 | 890 bp |
| 1.000x | 3014 | 2.43 Gbp | 648 | 2.45 Gbp |
Individual 1 Alternate Assembly
Version assembly_cambridge from 31 May 2019
fThaAma1.alt.asm.20190531.fasta.gz (539 MB)
Version assembly_cambridge from 31 May 2019
fThaAma1.alt.asm.20190531.fasta.gz (539 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 472 | 0.29 Mbp | 472 | 0.29 Mbp |
| 20 | 1185 | 0.22 Mbp | 1185 | 0.22 Mbp |
| 30 | 2105 | 0.17 Mbp | 2105 | 0.17 Mbp |
| 40 | 3234 | 0.14 Mbp | 3234 | 0.14 Mbp |
| 50 | 4592 | 0.12 Mbp | 4592 | 0.12 Mbp |
| 60 | 6223 | 98.76 Kbp | 6223 | 98.76 Kbp |
| 70 | 8194 | 81.03 Kbp | 8194 | 81.03 Kbp |
| 80 | 10642 | 63.98 Kbp | 10642 | 63.98 Kbp |
| 90 | 13869 | 46.26 Kbp | 13869 | 46.26 Kbp |
| 100 | 19574 | 193 bp | 19574 | 193 bp |
| 1.000x | 19575 | 1.77 Gbp | 19575 | 1.77 Gbp |
NG based on each assembly size.
(No genome size estimate available.)
(No genome size estimate available.)
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