Thamnophis elegans
Western terrestrial garter snake
Information
CC BY-NC 2.0 J. Maughn (flickr)
Raw Data
| Datatype | Approximate Coverage | Download Size |
|---|---|---|
| 10x | 108.10x | 104.274 GB |
| Bionano | 185.58x | 0.589 GB |
| Dovetail Genomics | 138.81x | 147.848 GB |
| PacBio Scraps | N/A | 170.298 GB |
| PacBio SubReads | 62.12x | 204.091 GB |
Coverage based on genome size 1.90 Gbp.
Last upload on 8 May 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Thamnophis_elegans/rThaEle1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thamnophis_elegans/rThaEle1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thamnophis_elegans/rThaEle1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thamnophis_elegans/rThaEle1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Thamnophis_elegans/rThaEle1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thamnophis_elegans/rThaEle1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thamnophis_elegans/rThaEle1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 20 August 2019
rThaEle1.pri.cur.20190820.fasta.gz (473 MB)
Version assembly_curated from 20 August 2019
rThaEle1.pri.cur.20190820.fasta.gz (473 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 7 | 18.19 Mbp | 1 | 174.86 Mbp |
| 20 | 20 | 12.51 Mbp | 2 | 152.01 Mbp |
| 30 | 39 | 7.58 Mbp | 3 | 145.13 Mbp |
| 40 | 70 | 5.07 Mbp | 4 | 142.85 Mbp |
| 50 | 115 | 3.55 Mbp | 6 | 88.49 Mbp |
| 60 | 188 | 1.78 Mbp | 8 | 80.82 Mbp |
| 70 | 338 | 0.88 Mbp | 11 | 71.29 Mbp |
| 80 | 721 | 0.28 Mbp | 14 | 49.40 Mbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.860x | 1883 | 1.63 Gbp | 365 | 1.67 Gbp |
Individual 1 Alternate Assembly
Version assembly_curated from 20 August 2019
rThaEle1.alt.cur.20190820.fasta.gz (536 MB)
Version assembly_curated from 20 August 2019
rThaEle1.alt.cur.20190820.fasta.gz (536 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 56 | 2.47 Mbp | 56 | 2.47 Mbp |
| 20 | 154 | 1.59 Mbp | 154 | 1.59 Mbp |
| 30 | 307 | 1.00 Mbp | 306 | 1.00 Mbp |
| 40 | 544 | 0.65 Mbp | 541 | 0.65 Mbp |
| 50 | 928 | 0.38 Mbp | 922 | 0.38 Mbp |
| 60 | 1628 | 0.20 Mbp | 1616 | 0.20 Mbp |
| 70 | 3049 | 98.56 Kbp | 3027 | 99.07 Kbp |
| 80 | 5522 | 61.08 Kbp | 5490 | 61.29 Kbp |
| 90 | 9529 | 36.36 Kbp | 9480 | 36.54 Kbp |
| 100 | - | - | - | - |
| 0.954x | 13642 | 1.81 Gbp | 13623 | 1.81 Gbp |
NG based on genome size 1.90 Gbp.
Data Use Policy
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please abide by the Data Use Policy
and contact us with any questions.