Thamnophis elegans

Western terrestrial garter snake


Information

Resource
NCBI Taxonomy Browser NCBI:txid35005

Resource Primary Assembly Alternate Assembly
GenBank GCA_009769535.1 GCA_009769695.1
ENA GCA_009769535.1 GCA_009769695.1
UCSC Genome Browser GCA_009769535.1 GCA_009769695.1

CC BY-NC 2.0 J. Maughn (flickr)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x205.39 Gbp108.10x104.274 GB
Bionano352.61 Gbp185.58x0.589 GB
Dovetail Genomics263.73 Gbp138.81x147.848 GB
PacBio SubReads118.03 Gbp62.12x204.091 GB
Coverage based on genome size 1.90 Gbp.
Last upload on 8 May 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Thamnophis_elegans/rThaEle1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thamnophis_elegans/rThaEle1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thamnophis_elegans/rThaEle1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thamnophis_elegans/rThaEle1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 20 August 2019
rThaEle1.pri.cur.20190820.fasta.gz (473 MB)

Contigs Scaffolds
NG LG Len LG Len
10 7 18.19 Mbp 1 174.86 Mbp
20 20 12.51 Mbp 2 152.01 Mbp
30 39 7.58 Mbp 3 145.13 Mbp
40 70 5.07 Mbp 4 142.85 Mbp
50 115 3.55 Mbp 6 88.49 Mbp
60 188 1.78 Mbp 8 80.82 Mbp
70 338 0.88 Mbp 11 71.29 Mbp
80 721 0.28 Mbp 14 49.40 Mbp
90 - - - -
100 - - - -
0.860x 1883 1.63 Gbp 365 1.67 Gbp
NG based on genome size 1.90 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 20 August 2019
rThaEle1.alt.cur.20190820.fasta.gz (536 MB)

Contigs Scaffolds
NG LG Len LG Len
10 56 2.47 Mbp 56 2.47 Mbp
20 154 1.59 Mbp 154 1.59 Mbp
30 307 1.00 Mbp 306 1.00 Mbp
40 544 0.65 Mbp 541 0.65 Mbp
50 928 0.38 Mbp 922 0.38 Mbp
60 1628 0.20 Mbp 1616 0.20 Mbp
70 3049 98.56 Kbp 3027 99.07 Kbp
80 5522 61.08 Kbp 5490 61.30 Kbp
90 9529 36.36 Kbp 9480 36.54 Kbp
100 - - - -
0.954x 13642 1.81 Gbp 13623 1.81 Gbp
NG based on genome size 1.90 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.