Thamnophis elegans

Western terrestrial garter snake


Information

CC BY-NC 2.0 J. Maughn (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10x108.10x104.274 GB
Bionano185.58x0.589 GB
Dovetail Genomics138.81x147.848 GB
PacBio ScrapsN/A170.298 GB
PacBio SubReads62.12x204.091 GB
Coverage based on genome size 1.90 Gbp.
Last upload on 8 May 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Thamnophis_elegans/rThaEle1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thamnophis_elegans/rThaEle1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thamnophis_elegans/rThaEle1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Thamnophis_elegans/rThaEle1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_vgp_standard_1.5 from 30 June 2019
rThaEle1.pri.asm.20190630.fasta.gz (481 MB)

Contigs Scaffolds
NG LG Len LG Len
10 7 18.19 Mbp 1 156.85 Mbp
20 20 12.51 Mbp 2 152.57 Mbp
30 39 7.58 Mbp 3 142.02 Mbp
40 70 5.07 Mbp 5 101.12 Mbp
50 115 3.55 Mbp 7 87.17 Mbp
60 188 1.78 Mbp 9 78.30 Mbp
70 336 0.90 Mbp 12 62.94 Mbp
80 704 0.30 Mbp 15 44.63 Mbp
90 - - 36 2.73 Mbp
100 - - - -
0.865x 1918 1.64 Gbp 420 1.78 Gbp
Individual 1 Alternate Assembly
Version assembly_vgp_standard_1.5 from 30 June 2019
rThaEle1.alt.asm.20190630.fasta.gz (533 MB)

Contigs Scaffolds
NG LG Len LG Len
10 56 2.47 Mbp 56 2.47 Mbp
20 154 1.59 Mbp 154 1.59 Mbp
30 307 1.00 Mbp 307 1.00 Mbp
40 544 0.64 Mbp 544 0.64 Mbp
50 931 0.38 Mbp 931 0.38 Mbp
60 1645 0.19 Mbp 1645 0.19 Mbp
70 3105 96.40 Kbp 3105 96.40 Kbp
80 5633 59.64 Kbp 5633 59.64 Kbp
90 9747 35.15 Kbp 9747 35.15 Kbp
100 - - - -
0.949x 13583 1.80 Gbp 13583 1.80 Gbp
NG based on genome size 1.90 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.