Trichosurus vulpecula
common brushtail possum
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid9337 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_011100635.1 | GCA_011100645.1 |
| ENA | GCA_011100635.1 | GCA_011100645.1 |
| UCSC Genome Browser | GCA_011100635.1 | GCA_011100645.1 |
CC BY 2.0 Donald Hobern (flickr)
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 242.17 Gbp | 80.72x | 115.568 GB |
| Arima | 445.09 Gbp | 148.36x | 227.757 GB |
| Bionano | 591.20 Gbp | 197.07x | 1.178 GB |
| PacBio SubReads | 182.18 Gbp | 60.73x | 315.605 GB |
Coverage based on genome size 3.00 Gbp.
Last upload on 17 May 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Trichosurus_vulpecula/mTriVul1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Trichosurus_vulpecula/mTriVul1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Trichosurus_vulpecula/mTriVul1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Trichosurus_vulpecula/mTriVul1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Trichosurus_vulpecula/mTriVul1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Trichosurus_vulpecula/mTriVul1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Trichosurus_vulpecula/mTriVul1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 15 January 2020
mTriVul1.pri.cur.20200115.fasta.gz (972 MB)
Version assembly_curated from 15 January 2020
mTriVul1.pri.cur.20200115.fasta.gz (972 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 15 | 13.76 Mbp | 0 | 0.57 Gbp |
| 20 | 41 | 9.81 Mbp | 1 | 463.07 Mbp |
| 30 | 76 | 7.41 Mbp | 1 | 463.07 Mbp |
| 40 | 122 | 5.81 Mbp | 2 | 445.41 Mbp |
| 50 | 179 | 4.82 Mbp | 3 | 442.56 Mbp |
| 60 | 248 | 4.01 Mbp | 3 | 442.56 Mbp |
| 70 | 332 | 3.13 Mbp | 4 | 310.11 Mbp |
| 80 | 447 | 2.22 Mbp | 5 | 285.15 Mbp |
| 90 | 605 | 1.59 Mbp | 6 | 275.47 Mbp |
| 100 | 849 | 0.94 Mbp | 7 | 267.64 Mbp |
| 1.114x | 2007 | 3.34 Gbp | 211 | 3.36 Gbp |
NG based on genome size 3.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 15 January 2020
mTriVul1.alt.cur.20200115.fasta.gz (757 MB)
Version assembly_curated from 15 January 2020
mTriVul1.alt.cur.20200115.fasta.gz (757 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 142 | 1.56 Mbp | 142 | 1.56 Mbp |
| 20 | 381 | 1.06 Mbp | 381 | 1.06 Mbp |
| 30 | 709 | 0.80 Mbp | 709 | 0.80 Mbp |
| 40 | 1143 | 0.60 Mbp | 1143 | 0.60 Mbp |
| 50 | 1722 | 0.44 Mbp | 1722 | 0.44 Mbp |
| 60 | 2552 | 0.30 Mbp | 2552 | 0.30 Mbp |
| 70 | 3898 | 0.16 Mbp | 3897 | 0.16 Mbp |
| 80 | 6931 | 62.47 Kbp | 6895 | 63.50 Kbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.864x | 12446 | 2.59 Gbp | 12133 | 2.59 Gbp |
NG based on genome size 3.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 October 2019
mTriVul1.MT.20191004.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 4 October 2019
mTriVul1.MT.20191004.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.