Trichosurus vulpecula
common brushtail possum
Information
CC BY 2.0 Donald Hobern (flickr)
Raw Data
| Datatype | Approximate Coverage | Download Size |
|---|---|---|
| 10x | 80.72x | 115.568 GB |
| Arima | 148.36x | 227.757 GB |
| Bionano | 197.07x | 1.178 GB |
| PacBio SubReads | 60.73x | 315.605 GB |
Coverage based on genome size 3.00 Gbp.
Last upload on 17 May 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Trichosurus_vulpecula/mTriVul1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Trichosurus_vulpecula/mTriVul1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Trichosurus_vulpecula/mTriVul1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Trichosurus_vulpecula/mTriVul1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Trichosurus_vulpecula/mTriVul1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Trichosurus_vulpecula/mTriVul1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Trichosurus_vulpecula/mTriVul1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_vgp_standard_1.5 from 15 August 2019
mTriVul1.pri.asm.20190815.fasta.gz (959 MB)
Version assembly_vgp_standard_1.5 from 15 August 2019
mTriVul1.pri.asm.20190815.fasta.gz (959 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 15 | 13.76 Mbp | 0 | 0.69 Gbp |
| 20 | 41 | 9.66 Mbp | 0 | 0.69 Gbp |
| 30 | 76 | 7.41 Mbp | 1 | 0.57 Gbp |
| 40 | 122 | 5.82 Mbp | 1 | 0.57 Gbp |
| 50 | 180 | 4.82 Mbp | 2 | 448.88 Mbp |
| 60 | 248 | 4.06 Mbp | 3 | 280.74 Mbp |
| 70 | 332 | 3.18 Mbp | 4 | 277.19 Mbp |
| 80 | 445 | 2.26 Mbp | 5 | 220.88 Mbp |
| 90 | 600 | 1.63 Mbp | 6 | 213.63 Mbp |
| 100 | 834 | 1.01 Mbp | 8 | 156.60 Mbp |
| 1.123x | 2015 | 3.37 Gbp | 238 | 3.39 Gbp |
Individual 1 Alternate Assembly
Version assembly_vgp_standard_1.5 from 15 August 2019
mTriVul1.alt.asm.20190815.fasta.gz (749 MB)
Version assembly_vgp_standard_1.5 from 15 August 2019
mTriVul1.alt.asm.20190815.fasta.gz (749 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 142 | 1.56 Mbp | 142 | 1.56 Mbp |
| 20 | 381 | 1.06 Mbp | 381 | 1.06 Mbp |
| 30 | 709 | 0.80 Mbp | 709 | 0.80 Mbp |
| 40 | 1143 | 0.60 Mbp | 1143 | 0.60 Mbp |
| 50 | 1722 | 0.44 Mbp | 1722 | 0.44 Mbp |
| 60 | 2552 | 0.30 Mbp | 2552 | 0.30 Mbp |
| 70 | 3902 | 0.16 Mbp | 3902 | 0.16 Mbp |
| 80 | 7061 | 57.82 Kbp | 7061 | 57.82 Kbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.854x | 11809 | 2.56 Gbp | 11809 | 2.56 Gbp |
NG based on genome size 3.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 October 2019
mTriVul1.MT.20191004.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 4 October 2019
mTriVul1.MT.20191004.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.